Gene : Thecc1EG007702 T. cacao v1.1
Defline:  (1 of 1) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  1511
Name:  ? Thecc1EG007702 Secondary Identifier:  ? PAC:27464783
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG007702 0.5kb upstream 0.5kb upstream 4612 true scaffold_2: 8438448-8443059 Theobroma cacao
Thecc1EG007702 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 8442560-8443059 Theobroma cacao
Thecc1EG007702 0.5kb downstream 0.5kb downstream 4612 true scaffold_2: 8437948-8442559 Theobroma cacao
Thecc1EG007702 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 8437948-8438447 Theobroma cacao
Thecc1EG007702 1.0kb upstream 1.0kb upstream 5112 true scaffold_2: 8438448-8443559 Theobroma cacao
Thecc1EG007702 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 8442560-8443559 Theobroma cacao
Thecc1EG007702 1.0kb downstream 1.0kb downstream 5112 true scaffold_2: 8437448-8442559 Theobroma cacao
Thecc1EG007702 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 8437448-8438447 Theobroma cacao
Thecc1EG007702 2.0kb upstream 2.0kb upstream 6112 true scaffold_2: 8438448-8444559 Theobroma cacao
Thecc1EG007702 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 8442560-8444559 Theobroma cacao
Thecc1EG007702 2.0kb downstream 2.0kb downstream 6112 true scaffold_2: 8436448-8442559 Theobroma cacao
Thecc1EG007702 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 8436448-8438447 Theobroma cacao
Thecc1EG007702 5.0kb upstream 5.0kb upstream 9112 true scaffold_2: 8438448-8447559 Theobroma cacao
Thecc1EG007702 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 8442560-8447559 Theobroma cacao
Thecc1EG007702 5.0kb downstream 5.0kb downstream 9112 true scaffold_2: 8433448-8442559 Theobroma cacao
Thecc1EG007702 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 8433448-8438447 Theobroma cacao
Thecc1EG007702 10.0kb upstream 10.0kb upstream 14112 true scaffold_2: 8438448-8452559 Theobroma cacao
Thecc1EG007702 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 8442560-8452559 Theobroma cacao
Thecc1EG007702 10.0kb downstream 10.0kb downstream 14112 true scaffold_2: 8428448-8442559 Theobroma cacao
Thecc1EG007702 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 8428448-8438447 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123835862 5264 Brassicales-Malvales View MSA
124340184 5266 SBM View MSA
124254333 5268 Malvidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain