Gene : Thecc1EG008334 T. cacao v1.1
Defline:  (1 of 119) PF00847 - AP2 domain (AP2) Genomic Order:  1873
Name:  ? Thecc1EG008334 Secondary Identifier:  ? PAC:27463537
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG008334 0.5kb upstream 0.5kb upstream 5056 true scaffold_2: 12689841-12694896 Theobroma cacao
Thecc1EG008334 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 12694397-12694896 Theobroma cacao
Thecc1EG008334 0.5kb downstream 0.5kb downstream 5056 true scaffold_2: 12689341-12694396 Theobroma cacao
Thecc1EG008334 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 12689341-12689840 Theobroma cacao
Thecc1EG008334 1.0kb upstream 1.0kb upstream 5556 true scaffold_2: 12689841-12695396 Theobroma cacao
Thecc1EG008334 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 12694397-12695396 Theobroma cacao
Thecc1EG008334 1.0kb downstream 1.0kb downstream 5556 true scaffold_2: 12688841-12694396 Theobroma cacao
Thecc1EG008334 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 12688841-12689840 Theobroma cacao
Thecc1EG008334 2.0kb upstream 2.0kb upstream 6556 true scaffold_2: 12689841-12696396 Theobroma cacao
Thecc1EG008334 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 12694397-12696396 Theobroma cacao
Thecc1EG008334 2.0kb downstream 2.0kb downstream 6556 true scaffold_2: 12687841-12694396 Theobroma cacao
Thecc1EG008334 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 12687841-12689840 Theobroma cacao
Thecc1EG008334 5.0kb upstream 5.0kb upstream 9556 true scaffold_2: 12689841-12699396 Theobroma cacao
Thecc1EG008334 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 12694397-12699396 Theobroma cacao
Thecc1EG008334 5.0kb downstream 5.0kb downstream 9556 true scaffold_2: 12684841-12694396 Theobroma cacao
Thecc1EG008334 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 12684841-12689840 Theobroma cacao
Thecc1EG008334 10.0kb upstream 10.0kb upstream 14556 true scaffold_2: 12689841-12704396 Theobroma cacao
Thecc1EG008334 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 12694397-12704396 Theobroma cacao
Thecc1EG008334 10.0kb downstream 10.0kb downstream 14556 true scaffold_2: 12679841-12694396 Theobroma cacao
Thecc1EG008334 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 12679841-12689840 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123817592 5264 Brassicales-Malvales Singleton cluster - no MSA
124313937 5266 SBM Singleton cluster - no MSA
124162979 5268 Malvidae Singleton cluster - no MSA
124066336 5270 Rosid View MSA
123738073 5271 Pentapetalae View MSA
122789741 5272 Eudicot View MSA
122050930 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain