Gene : Thecc1EG009231 T. cacao v1.1
Defline:  (1 of 1) PTHR11946:SF82 - ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  2156
Name:  ? Thecc1EG009231 Secondary Identifier:  ? PAC:27461085
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG009231 0.5kb upstream 0.5kb upstream 35125 true scaffold_2: 21710755-21745879 Theobroma cacao
Thecc1EG009231 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 21710755-21711254 Theobroma cacao
Thecc1EG009231 0.5kb downstream 0.5kb downstream 35125 true scaffold_2: 21711255-21746379 Theobroma cacao
Thecc1EG009231 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 21745880-21746379 Theobroma cacao
Thecc1EG009231 1.0kb upstream 1.0kb upstream 35625 true scaffold_2: 21710255-21745879 Theobroma cacao
Thecc1EG009231 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 21710255-21711254 Theobroma cacao
Thecc1EG009231 1.0kb downstream 1.0kb downstream 35625 true scaffold_2: 21711255-21746879 Theobroma cacao
Thecc1EG009231 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 21745880-21746879 Theobroma cacao
Thecc1EG009231 2.0kb upstream 2.0kb upstream 36625 true scaffold_2: 21709255-21745879 Theobroma cacao
Thecc1EG009231 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 21709255-21711254 Theobroma cacao
Thecc1EG009231 2.0kb downstream 2.0kb downstream 36625 true scaffold_2: 21711255-21747879 Theobroma cacao
Thecc1EG009231 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 21745880-21747879 Theobroma cacao
Thecc1EG009231 5.0kb upstream 5.0kb upstream 39625 true scaffold_2: 21706255-21745879 Theobroma cacao
Thecc1EG009231 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 21706255-21711254 Theobroma cacao
Thecc1EG009231 5.0kb downstream 5.0kb downstream 39625 true scaffold_2: 21711255-21750879 Theobroma cacao
Thecc1EG009231 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 21745880-21750879 Theobroma cacao
Thecc1EG009231 10.0kb upstream 10.0kb upstream 44625 true scaffold_2: 21701255-21745879 Theobroma cacao
Thecc1EG009231 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 21701255-21711254 Theobroma cacao
Thecc1EG009231 10.0kb downstream 10.0kb downstream 44625 true scaffold_2: 21711255-21755879 Theobroma cacao
Thecc1EG009231 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 21745880-21755879 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829224 5264 Brassicales-Malvales View MSA
124344420 5266 SBM View MSA
124243360 5268 Malvidae View MSA
124064635 5270 Rosid View MSA
123740769 5271 Pentapetalae View MSA
122790755 5272 Eudicot View MSA
122042566 5273 Angiosperm View MSA
121346634 5274 Embryophyte View MSA
123424788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain