Gene : Thecc1EG009873 T. cacao v1.1
Defline:  (1 of 5) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  2297
Name:  ? Thecc1EG009873 Secondary Identifier:  ? PAC:27459923
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CALVIN-PWY Theobroma cacao pathologic  
Tcacao PHOTOALL-PWY Theobroma cacao pathologic  
Tcacao PWY-5723 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG009873 0.5kb upstream 0.5kb upstream 2102 true scaffold_2: 28376870-28378971 Theobroma cacao
Thecc1EG009873 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 28378472-28378971 Theobroma cacao
Thecc1EG009873 0.5kb downstream 0.5kb downstream 2102 true scaffold_2: 28376370-28378471 Theobroma cacao
Thecc1EG009873 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 28376370-28376869 Theobroma cacao
Thecc1EG009873 1.0kb upstream 1.0kb upstream 2602 true scaffold_2: 28376870-28379471 Theobroma cacao
Thecc1EG009873 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 28378472-28379471 Theobroma cacao
Thecc1EG009873 1.0kb downstream 1.0kb downstream 2602 true scaffold_2: 28375870-28378471 Theobroma cacao
Thecc1EG009873 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 28375870-28376869 Theobroma cacao
Thecc1EG009873 2.0kb upstream 2.0kb upstream 3602 true scaffold_2: 28376870-28380471 Theobroma cacao
Thecc1EG009873 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 28378472-28380471 Theobroma cacao
Thecc1EG009873 2.0kb downstream 2.0kb downstream 3602 true scaffold_2: 28374870-28378471 Theobroma cacao
Thecc1EG009873 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 28374870-28376869 Theobroma cacao
Thecc1EG009873 5.0kb upstream 5.0kb upstream 6602 true scaffold_2: 28376870-28383471 Theobroma cacao
Thecc1EG009873 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28378472-28383471 Theobroma cacao
Thecc1EG009873 5.0kb downstream 5.0kb downstream 6602 true scaffold_2: 28371870-28378471 Theobroma cacao
Thecc1EG009873 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 28371870-28376869 Theobroma cacao
Thecc1EG009873 10.0kb upstream 10.0kb upstream 11602 true scaffold_2: 28376870-28388471 Theobroma cacao
Thecc1EG009873 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28378472-28388471 Theobroma cacao
Thecc1EG009873 10.0kb downstream 10.0kb downstream 11602 true scaffold_2: 28366870-28378471 Theobroma cacao
Thecc1EG009873 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 28366870-28376869 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123842063 5264 Brassicales-Malvales View MSA
124323220 5266 SBM View MSA
124250367 5268 Malvidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain