Gene : Thecc1EG009742 T. cacao v1.1
Defline:  (1 of 1) PTHR11088//PTHR11088:SF27 - TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED // ADENYLATE ISOPENTENYLTRANSFERASE 1, CHLOROPLASTIC-RELATED Genomic Order:  2270
Name:  ? Thecc1EG009742 Secondary Identifier:  ? PAC:27459703
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-2681 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG009742 0.5kb upstream 0.5kb upstream 5444 true scaffold_2: 27074256-27079699 Theobroma cacao
Thecc1EG009742 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 27079200-27079699 Theobroma cacao
Thecc1EG009742 0.5kb downstream 0.5kb downstream 5444 true scaffold_2: 27073756-27079199 Theobroma cacao
Thecc1EG009742 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 27073756-27074255 Theobroma cacao
Thecc1EG009742 1.0kb upstream 1.0kb upstream 5944 true scaffold_2: 27074256-27080199 Theobroma cacao
Thecc1EG009742 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 27079200-27080199 Theobroma cacao
Thecc1EG009742 1.0kb downstream 1.0kb downstream 5944 true scaffold_2: 27073256-27079199 Theobroma cacao
Thecc1EG009742 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 27073256-27074255 Theobroma cacao
Thecc1EG009742 2.0kb upstream 2.0kb upstream 6944 true scaffold_2: 27074256-27081199 Theobroma cacao
Thecc1EG009742 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 27079200-27081199 Theobroma cacao
Thecc1EG009742 2.0kb downstream 2.0kb downstream 6944 true scaffold_2: 27072256-27079199 Theobroma cacao
Thecc1EG009742 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 27072256-27074255 Theobroma cacao
Thecc1EG009742 5.0kb upstream 5.0kb upstream 9944 true scaffold_2: 27074256-27084199 Theobroma cacao
Thecc1EG009742 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 27079200-27084199 Theobroma cacao
Thecc1EG009742 5.0kb downstream 5.0kb downstream 9944 true scaffold_2: 27069256-27079199 Theobroma cacao
Thecc1EG009742 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 27069256-27074255 Theobroma cacao
Thecc1EG009742 10.0kb upstream 10.0kb upstream 14944 true scaffold_2: 27074256-27089199 Theobroma cacao
Thecc1EG009742 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 27079200-27089199 Theobroma cacao
Thecc1EG009742 10.0kb downstream 10.0kb downstream 14944 true scaffold_2: 27064256-27079199 Theobroma cacao
Thecc1EG009742 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 27064256-27074255 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837698 5264 Brassicales-Malvales View MSA
124349222 5266 SBM View MSA
124250835 5268 Malvidae View MSA
124061925 5270 Rosid View MSA
123742682 5271 Pentapetalae View MSA
122792550 5272 Eudicot View MSA
122046326 5273 Angiosperm View MSA
121310589 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain