Gene : Thecc1EG010253 T. cacao v1.1
Defline:  (1 of 4) K00797 - spermidine synthase (speE, SRM) Genomic Order:  2442
Name:  ? Thecc1EG010253 Secondary Identifier:  ? PAC:27461152
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao BSUBPOLYAMSYN-PWY Theobroma cacao pathologic  
Tcacao POLYAMINSYN3-PWY Theobroma cacao pathologic  
Tcacao PWY-7528 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG010253 0.5kb upstream 0.5kb upstream 12645 true scaffold_2: 31954453-31967097 Theobroma cacao
Thecc1EG010253 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 31954453-31954952 Theobroma cacao
Thecc1EG010253 0.5kb downstream 0.5kb downstream 12645 true scaffold_2: 31954953-31967597 Theobroma cacao
Thecc1EG010253 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 31967098-31967597 Theobroma cacao
Thecc1EG010253 1.0kb upstream 1.0kb upstream 13145 true scaffold_2: 31953953-31967097 Theobroma cacao
Thecc1EG010253 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 31953953-31954952 Theobroma cacao
Thecc1EG010253 1.0kb downstream 1.0kb downstream 13145 true scaffold_2: 31954953-31968097 Theobroma cacao
Thecc1EG010253 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 31967098-31968097 Theobroma cacao
Thecc1EG010253 2.0kb upstream 2.0kb upstream 14145 true scaffold_2: 31952953-31967097 Theobroma cacao
Thecc1EG010253 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 31952953-31954952 Theobroma cacao
Thecc1EG010253 2.0kb downstream 2.0kb downstream 14145 true scaffold_2: 31954953-31969097 Theobroma cacao
Thecc1EG010253 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 31967098-31969097 Theobroma cacao
Thecc1EG010253 5.0kb upstream 5.0kb upstream 17145 true scaffold_2: 31949953-31967097 Theobroma cacao
Thecc1EG010253 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 31949953-31954952 Theobroma cacao
Thecc1EG010253 5.0kb downstream 5.0kb downstream 17145 true scaffold_2: 31954953-31972097 Theobroma cacao
Thecc1EG010253 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 31967098-31972097 Theobroma cacao
Thecc1EG010253 10.0kb upstream 10.0kb upstream 22145 true scaffold_2: 31944953-31967097 Theobroma cacao
Thecc1EG010253 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 31944953-31954952 Theobroma cacao
Thecc1EG010253 10.0kb downstream 10.0kb downstream 22145 true scaffold_2: 31954953-31977097 Theobroma cacao
Thecc1EG010253 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 31967098-31977097 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837275 5264 Brassicales-Malvales View MSA
124342552 5266 SBM View MSA
124246037 5268 Malvidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain