Gene : Thecc1EG010689 T. cacao v1.1
Defline:  (1 of 8) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  2693
Name:  ? Thecc1EG010689 Secondary Identifier:  ? PAC:27464747
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG010689 0.5kb upstream 0.5kb upstream 1789 true scaffold_2: 34982050-34983838 Theobroma cacao
Thecc1EG010689 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 34983339-34983838 Theobroma cacao
Thecc1EG010689 0.5kb downstream 0.5kb downstream 1789 true scaffold_2: 34981550-34983338 Theobroma cacao
Thecc1EG010689 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 34981550-34982049 Theobroma cacao
Thecc1EG010689 1.0kb upstream 1.0kb upstream 2289 true scaffold_2: 34982050-34984338 Theobroma cacao
Thecc1EG010689 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 34983339-34984338 Theobroma cacao
Thecc1EG010689 1.0kb downstream 1.0kb downstream 2289 true scaffold_2: 34981050-34983338 Theobroma cacao
Thecc1EG010689 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 34981050-34982049 Theobroma cacao
Thecc1EG010689 2.0kb upstream 2.0kb upstream 3289 true scaffold_2: 34982050-34985338 Theobroma cacao
Thecc1EG010689 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 34983339-34985338 Theobroma cacao
Thecc1EG010689 2.0kb downstream 2.0kb downstream 3289 true scaffold_2: 34980050-34983338 Theobroma cacao
Thecc1EG010689 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 34980050-34982049 Theobroma cacao
Thecc1EG010689 5.0kb upstream 5.0kb upstream 6289 true scaffold_2: 34982050-34988338 Theobroma cacao
Thecc1EG010689 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 34983339-34988338 Theobroma cacao
Thecc1EG010689 5.0kb downstream 5.0kb downstream 6289 true scaffold_2: 34977050-34983338 Theobroma cacao
Thecc1EG010689 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 34977050-34982049 Theobroma cacao
Thecc1EG010689 10.0kb upstream 10.0kb upstream 11289 true scaffold_2: 34982050-34993338 Theobroma cacao
Thecc1EG010689 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 34983339-34993338 Theobroma cacao
Thecc1EG010689 10.0kb downstream 10.0kb downstream 11289 true scaffold_2: 34972050-34983338 Theobroma cacao
Thecc1EG010689 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 34972050-34982049 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841175 5264 Brassicales-Malvales View MSA
124322863 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain