Gene : Thecc1EG011209 T. cacao v1.1
Defline:  (1 of 154) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED Genomic Order:  3024
Name:  ? Thecc1EG011209 Secondary Identifier:  ? PAC:27461894
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG011209 0.5kb upstream 0.5kb upstream 7363 true scaffold_2: 38722706-38730068 Theobroma cacao
Thecc1EG011209 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 38722706-38723205 Theobroma cacao
Thecc1EG011209 0.5kb downstream 0.5kb downstream 7363 true scaffold_2: 38723206-38730568 Theobroma cacao
Thecc1EG011209 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 38730069-38730568 Theobroma cacao
Thecc1EG011209 1.0kb upstream 1.0kb upstream 7863 true scaffold_2: 38722206-38730068 Theobroma cacao
Thecc1EG011209 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 38722206-38723205 Theobroma cacao
Thecc1EG011209 1.0kb downstream 1.0kb downstream 7863 true scaffold_2: 38723206-38731068 Theobroma cacao
Thecc1EG011209 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 38730069-38731068 Theobroma cacao
Thecc1EG011209 2.0kb upstream 2.0kb upstream 8863 true scaffold_2: 38721206-38730068 Theobroma cacao
Thecc1EG011209 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 38721206-38723205 Theobroma cacao
Thecc1EG011209 2.0kb downstream 2.0kb downstream 8863 true scaffold_2: 38723206-38732068 Theobroma cacao
Thecc1EG011209 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 38730069-38732068 Theobroma cacao
Thecc1EG011209 5.0kb upstream 5.0kb upstream 11863 true scaffold_2: 38718206-38730068 Theobroma cacao
Thecc1EG011209 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 38718206-38723205 Theobroma cacao
Thecc1EG011209 5.0kb downstream 5.0kb downstream 11863 true scaffold_2: 38723206-38735068 Theobroma cacao
Thecc1EG011209 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 38730069-38735068 Theobroma cacao
Thecc1EG011209 10.0kb upstream 10.0kb upstream 16863 true scaffold_2: 38713206-38730068 Theobroma cacao
Thecc1EG011209 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 38713206-38723205 Theobroma cacao
Thecc1EG011209 10.0kb downstream 10.0kb downstream 16863 true scaffold_2: 38723206-38740068 Theobroma cacao
Thecc1EG011209 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 38730069-38740068 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029855 5273 Angiosperm View MSA
123823565 5264 Brassicales-Malvales View MSA
124319641 5266 SBM View MSA
124168173 5268 Malvidae View MSA
124041079 5270 Rosid View MSA
123753008 5271 Pentapetalae View MSA
122774914 5272 Eudicot View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain