Gene : Thecc1EG011484 T. cacao v1.1
Defline:  (1 of 3) PF09011 - HMG-box domain (HMG_box_2) Genomic Order:  3260
Name:  ? Thecc1EG011484 Secondary Identifier:  ? PAC:27460818
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG011484 0.5kb upstream 0.5kb upstream 3448 true scaffold_2: 40426590-40430037 Theobroma cacao
Thecc1EG011484 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 40429538-40430037 Theobroma cacao
Thecc1EG011484 0.5kb downstream 0.5kb downstream 3448 true scaffold_2: 40426090-40429537 Theobroma cacao
Thecc1EG011484 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 40426090-40426589 Theobroma cacao
Thecc1EG011484 1.0kb upstream 1.0kb upstream 3948 true scaffold_2: 40426590-40430537 Theobroma cacao
Thecc1EG011484 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 40429538-40430537 Theobroma cacao
Thecc1EG011484 1.0kb downstream 1.0kb downstream 3948 true scaffold_2: 40425590-40429537 Theobroma cacao
Thecc1EG011484 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 40425590-40426589 Theobroma cacao
Thecc1EG011484 2.0kb upstream 2.0kb upstream 4948 true scaffold_2: 40426590-40431537 Theobroma cacao
Thecc1EG011484 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 40429538-40431537 Theobroma cacao
Thecc1EG011484 2.0kb downstream 2.0kb downstream 4948 true scaffold_2: 40424590-40429537 Theobroma cacao
Thecc1EG011484 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 40424590-40426589 Theobroma cacao
Thecc1EG011484 5.0kb upstream 5.0kb upstream 7948 true scaffold_2: 40426590-40434537 Theobroma cacao
Thecc1EG011484 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 40429538-40434537 Theobroma cacao
Thecc1EG011484 5.0kb downstream 5.0kb downstream 7948 true scaffold_2: 40421590-40429537 Theobroma cacao
Thecc1EG011484 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 40421590-40426589 Theobroma cacao
Thecc1EG011484 10.0kb upstream 10.0kb upstream 12948 true scaffold_2: 40426590-40439537 Theobroma cacao
Thecc1EG011484 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 40429538-40439537 Theobroma cacao
Thecc1EG011484 10.0kb downstream 10.0kb downstream 12948 true scaffold_2: 40416590-40429537 Theobroma cacao
Thecc1EG011484 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 40416590-40426589 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833572 5264 Brassicales-Malvales View MSA
124337620 5266 SBM View MSA
124240629 5268 Malvidae View MSA
124064616 5270 Rosid View MSA
123751442 5271 Pentapetalae View MSA
122787834 5272 Eudicot View MSA
122046803 5273 Angiosperm View MSA
121349155 5274 Embryophyte View MSA
123426058 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain