Gene : Thecc1EG011609 T. cacao v1.1
Defline:  (1 of 3) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  3358
Name:  ? Thecc1EG011609 Secondary Identifier:  ? PAC:27459633
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-3461 Theobroma cacao pathologic  
Tcacao PWY-3462 Theobroma cacao pathologic  
Tcacao PWY-3481 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG011609 0.5kb upstream 0.5kb upstream 3177 true scaffold_2: 40922293-40925469 Theobroma cacao
Thecc1EG011609 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 40922293-40922792 Theobroma cacao
Thecc1EG011609 0.5kb downstream 0.5kb downstream 3177 true scaffold_2: 40922793-40925969 Theobroma cacao
Thecc1EG011609 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 40925470-40925969 Theobroma cacao
Thecc1EG011609 1.0kb upstream 1.0kb upstream 3677 true scaffold_2: 40921793-40925469 Theobroma cacao
Thecc1EG011609 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 40921793-40922792 Theobroma cacao
Thecc1EG011609 1.0kb downstream 1.0kb downstream 3677 true scaffold_2: 40922793-40926469 Theobroma cacao
Thecc1EG011609 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 40925470-40926469 Theobroma cacao
Thecc1EG011609 2.0kb upstream 2.0kb upstream 4677 true scaffold_2: 40920793-40925469 Theobroma cacao
Thecc1EG011609 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 40920793-40922792 Theobroma cacao
Thecc1EG011609 2.0kb downstream 2.0kb downstream 4677 true scaffold_2: 40922793-40927469 Theobroma cacao
Thecc1EG011609 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 40925470-40927469 Theobroma cacao
Thecc1EG011609 5.0kb upstream 5.0kb upstream 7677 true scaffold_2: 40917793-40925469 Theobroma cacao
Thecc1EG011609 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 40917793-40922792 Theobroma cacao
Thecc1EG011609 5.0kb downstream 5.0kb downstream 7677 true scaffold_2: 40922793-40930469 Theobroma cacao
Thecc1EG011609 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 40925470-40930469 Theobroma cacao
Thecc1EG011609 10.0kb upstream 10.0kb upstream 12677 true scaffold_2: 40912793-40925469 Theobroma cacao
Thecc1EG011609 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 40912793-40922792 Theobroma cacao
Thecc1EG011609 10.0kb downstream 10.0kb downstream 12677 true scaffold_2: 40922793-40935469 Theobroma cacao
Thecc1EG011609 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 40925470-40935469 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
123835152 5264 Brassicales-Malvales View MSA
124322009 5266 SBM View MSA
124252605 5268 Malvidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain