Gene : Thecc1EG011701 T. cacao v1.1
Defline:  (1 of 11) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  3437
Name:  ? Thecc1EG011701 Secondary Identifier:  ? PAC:27463631
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG011701 0.5kb upstream 0.5kb upstream 5735 true scaffold_2: 41347692-41353426 Theobroma cacao
Thecc1EG011701 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 41352927-41353426 Theobroma cacao
Thecc1EG011701 0.5kb downstream 0.5kb downstream 5735 true scaffold_2: 41347192-41352926 Theobroma cacao
Thecc1EG011701 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41347192-41347691 Theobroma cacao
Thecc1EG011701 1.0kb upstream 1.0kb upstream 6235 true scaffold_2: 41347692-41353926 Theobroma cacao
Thecc1EG011701 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 41352927-41353926 Theobroma cacao
Thecc1EG011701 1.0kb downstream 1.0kb downstream 6235 true scaffold_2: 41346692-41352926 Theobroma cacao
Thecc1EG011701 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41346692-41347691 Theobroma cacao
Thecc1EG011701 2.0kb upstream 2.0kb upstream 7235 true scaffold_2: 41347692-41354926 Theobroma cacao
Thecc1EG011701 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 41352927-41354926 Theobroma cacao
Thecc1EG011701 2.0kb downstream 2.0kb downstream 7235 true scaffold_2: 41345692-41352926 Theobroma cacao
Thecc1EG011701 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41345692-41347691 Theobroma cacao
Thecc1EG011701 5.0kb upstream 5.0kb upstream 10235 true scaffold_2: 41347692-41357926 Theobroma cacao
Thecc1EG011701 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 41352927-41357926 Theobroma cacao
Thecc1EG011701 5.0kb downstream 5.0kb downstream 10235 true scaffold_2: 41342692-41352926 Theobroma cacao
Thecc1EG011701 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41342692-41347691 Theobroma cacao
Thecc1EG011701 10.0kb upstream 10.0kb upstream 15235 true scaffold_2: 41347692-41362926 Theobroma cacao
Thecc1EG011701 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 41352927-41362926 Theobroma cacao
Thecc1EG011701 10.0kb downstream 10.0kb downstream 15235 true scaffold_2: 41337692-41352926 Theobroma cacao
Thecc1EG011701 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41337692-41347691 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841181 5264 Brassicales-Malvales View MSA
124347410 5266 SBM View MSA
124245481 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain