Gene : Thecc1EG046720 T. cacao v1.1
Defline:  (1 of 3) 1.2.1.27 - Methylmalonate-semialdehyde dehydrogenase (CoA acylating) / MSDH Genomic Order:  1218
Name:  ? Thecc1EG046720 Secondary Identifier:  ? PAC:27462620
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao VALDEG-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG046720 0.5kb upstream 0.5kb upstream 12845 true scaffold_2: 6543047-6555891 Theobroma cacao
Thecc1EG046720 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 6543047-6543546 Theobroma cacao
Thecc1EG046720 0.5kb downstream 0.5kb downstream 12845 true scaffold_2: 6543547-6556391 Theobroma cacao
Thecc1EG046720 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 6555892-6556391 Theobroma cacao
Thecc1EG046720 1.0kb upstream 1.0kb upstream 13345 true scaffold_2: 6542547-6555891 Theobroma cacao
Thecc1EG046720 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 6542547-6543546 Theobroma cacao
Thecc1EG046720 1.0kb downstream 1.0kb downstream 13345 true scaffold_2: 6543547-6556891 Theobroma cacao
Thecc1EG046720 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 6555892-6556891 Theobroma cacao
Thecc1EG046720 2.0kb upstream 2.0kb upstream 14345 true scaffold_2: 6541547-6555891 Theobroma cacao
Thecc1EG046720 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 6541547-6543546 Theobroma cacao
Thecc1EG046720 2.0kb downstream 2.0kb downstream 14345 true scaffold_2: 6543547-6557891 Theobroma cacao
Thecc1EG046720 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 6555892-6557891 Theobroma cacao
Thecc1EG046720 5.0kb upstream 5.0kb upstream 17345 true scaffold_2: 6538547-6555891 Theobroma cacao
Thecc1EG046720 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 6538547-6543546 Theobroma cacao
Thecc1EG046720 5.0kb downstream 5.0kb downstream 17345 true scaffold_2: 6543547-6560891 Theobroma cacao
Thecc1EG046720 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 6555892-6560891 Theobroma cacao
Thecc1EG046720 10.0kb upstream 10.0kb upstream 22345 true scaffold_2: 6533547-6555891 Theobroma cacao
Thecc1EG046720 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 6533547-6543546 Theobroma cacao
Thecc1EG046720 10.0kb downstream 10.0kb downstream 22345 true scaffold_2: 6543547-6565891 Theobroma cacao
Thecc1EG046720 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 6555892-6565891 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780918 5273 Angiosperm View MSA
123825766 5264 Brassicales-Malvales View MSA
124347780 5266 SBM View MSA
124245433 5268 Malvidae View MSA
124071727 5270 Rosid View MSA
123748275 5271 Pentapetalae View MSA
122772530 5272 Eudicot View MSA
121052516 5274 Embryophyte View MSA
123092560 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain