Gene : Thecc1EG012129 T. cacao v1.1
Defline:  (1 of 1) PF13637//PF13962//PF14244 - Ankyrin repeats (many copies) (Ank_4) // Domain of unknown function (PGG) // gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  164
Name:  ? Thecc1EG012129 Secondary Identifier:  ? PAC:27446820
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG012129 0.5kb upstream 0.5kb upstream 8351 true scaffold_3: 1203588-1211938 Theobroma cacao
Thecc1EG012129 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1211439-1211938 Theobroma cacao
Thecc1EG012129 0.5kb downstream 0.5kb downstream 8351 true scaffold_3: 1203088-1211438 Theobroma cacao
Thecc1EG012129 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1203088-1203587 Theobroma cacao
Thecc1EG012129 1.0kb upstream 1.0kb upstream 8851 true scaffold_3: 1203588-1212438 Theobroma cacao
Thecc1EG012129 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1211439-1212438 Theobroma cacao
Thecc1EG012129 1.0kb downstream 1.0kb downstream 8851 true scaffold_3: 1202588-1211438 Theobroma cacao
Thecc1EG012129 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1202588-1203587 Theobroma cacao
Thecc1EG012129 2.0kb upstream 2.0kb upstream 9851 true scaffold_3: 1203588-1213438 Theobroma cacao
Thecc1EG012129 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1211439-1213438 Theobroma cacao
Thecc1EG012129 2.0kb downstream 2.0kb downstream 9851 true scaffold_3: 1201588-1211438 Theobroma cacao
Thecc1EG012129 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1201588-1203587 Theobroma cacao
Thecc1EG012129 5.0kb upstream 5.0kb upstream 12851 true scaffold_3: 1203588-1216438 Theobroma cacao
Thecc1EG012129 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1211439-1216438 Theobroma cacao
Thecc1EG012129 5.0kb downstream 5.0kb downstream 12851 true scaffold_3: 1198588-1211438 Theobroma cacao
Thecc1EG012129 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1198588-1203587 Theobroma cacao
Thecc1EG012129 10.0kb upstream 10.0kb upstream 17851 true scaffold_3: 1203588-1221438 Theobroma cacao
Thecc1EG012129 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1211439-1221438 Theobroma cacao
Thecc1EG012129 10.0kb downstream 10.0kb downstream 17851 true scaffold_3: 1193588-1211438 Theobroma cacao
Thecc1EG012129 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1193588-1203587 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823860 5264 Brassicales-Malvales View MSA
124319914 5266 SBM View MSA
124254356 5268 Malvidae View MSA
124074259 5270 Rosid View MSA
123753624 5271 Pentapetalae View MSA
122797775 5272 Eudicot View MSA
122051097 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351705 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain