Gene : Thecc1EG012116 T. cacao v1.1
Defline:  (1 of 1) PF12796//PF13962//PF14244 - Ankyrin repeats (3 copies) (Ank_2) // Domain of unknown function (PGG) // gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  157
Name:  ? Thecc1EG012116 Secondary Identifier:  ? PAC:27446837
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG012116 0.5kb upstream 0.5kb upstream 59684 true scaffold_3: 1109745-1169428 Theobroma cacao
Thecc1EG012116 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1168929-1169428 Theobroma cacao
Thecc1EG012116 0.5kb downstream 0.5kb downstream 59684 true scaffold_3: 1109245-1168928 Theobroma cacao
Thecc1EG012116 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1109245-1109744 Theobroma cacao
Thecc1EG012116 1.0kb upstream 1.0kb upstream 60184 true scaffold_3: 1109745-1169928 Theobroma cacao
Thecc1EG012116 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1168929-1169928 Theobroma cacao
Thecc1EG012116 1.0kb downstream 1.0kb downstream 60184 true scaffold_3: 1108745-1168928 Theobroma cacao
Thecc1EG012116 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1108745-1109744 Theobroma cacao
Thecc1EG012116 2.0kb upstream 2.0kb upstream 61184 true scaffold_3: 1109745-1170928 Theobroma cacao
Thecc1EG012116 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1168929-1170928 Theobroma cacao
Thecc1EG012116 2.0kb downstream 2.0kb downstream 61184 true scaffold_3: 1107745-1168928 Theobroma cacao
Thecc1EG012116 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1107745-1109744 Theobroma cacao
Thecc1EG012116 5.0kb upstream 5.0kb upstream 64184 true scaffold_3: 1109745-1173928 Theobroma cacao
Thecc1EG012116 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1168929-1173928 Theobroma cacao
Thecc1EG012116 5.0kb downstream 5.0kb downstream 64184 true scaffold_3: 1104745-1168928 Theobroma cacao
Thecc1EG012116 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1104745-1109744 Theobroma cacao
Thecc1EG012116 10.0kb upstream 10.0kb upstream 69184 true scaffold_3: 1109745-1178928 Theobroma cacao
Thecc1EG012116 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1168929-1178928 Theobroma cacao
Thecc1EG012116 10.0kb downstream 10.0kb downstream 69184 true scaffold_3: 1099745-1168928 Theobroma cacao
Thecc1EG012116 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1099745-1109744 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823860 5264 Brassicales-Malvales View MSA
124319914 5266 SBM View MSA
124254356 5268 Malvidae View MSA
124074259 5270 Rosid View MSA
123753624 5271 Pentapetalae View MSA
122797775 5272 Eudicot View MSA
122051097 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351705 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain