Gene : Thecc1EG012489 T. cacao v1.1
Defline:  (1 of 1) PTHR11945//PTHR11945:SF157 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  422
Name:  ? Thecc1EG012489 Secondary Identifier:  ? PAC:27450318
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG012489 0.5kb upstream 0.5kb upstream 1357 true scaffold_3: 3283698-3285054 Theobroma cacao
Thecc1EG012489 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 3284555-3285054 Theobroma cacao
Thecc1EG012489 0.5kb downstream 0.5kb downstream 1357 true scaffold_3: 3283198-3284554 Theobroma cacao
Thecc1EG012489 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 3283198-3283697 Theobroma cacao
Thecc1EG012489 1.0kb upstream 1.0kb upstream 1857 true scaffold_3: 3283698-3285554 Theobroma cacao
Thecc1EG012489 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 3284555-3285554 Theobroma cacao
Thecc1EG012489 1.0kb downstream 1.0kb downstream 1857 true scaffold_3: 3282698-3284554 Theobroma cacao
Thecc1EG012489 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 3282698-3283697 Theobroma cacao
Thecc1EG012489 2.0kb upstream 2.0kb upstream 2857 true scaffold_3: 3283698-3286554 Theobroma cacao
Thecc1EG012489 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 3284555-3286554 Theobroma cacao
Thecc1EG012489 2.0kb downstream 2.0kb downstream 2857 true scaffold_3: 3281698-3284554 Theobroma cacao
Thecc1EG012489 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 3281698-3283697 Theobroma cacao
Thecc1EG012489 5.0kb upstream 5.0kb upstream 5857 true scaffold_3: 3283698-3289554 Theobroma cacao
Thecc1EG012489 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 3284555-3289554 Theobroma cacao
Thecc1EG012489 5.0kb downstream 5.0kb downstream 5857 true scaffold_3: 3278698-3284554 Theobroma cacao
Thecc1EG012489 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 3278698-3283697 Theobroma cacao
Thecc1EG012489 10.0kb upstream 10.0kb upstream 10857 true scaffold_3: 3283698-3294554 Theobroma cacao
Thecc1EG012489 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 3284555-3294554 Theobroma cacao
Thecc1EG012489 10.0kb downstream 10.0kb downstream 10857 true scaffold_3: 3273698-3284554 Theobroma cacao
Thecc1EG012489 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 3273698-3283697 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123818588 5264 Brassicales-Malvales Singleton cluster - no MSA
124314894 5266 SBM Singleton cluster - no MSA
124248858 5268 Malvidae View MSA
124073225 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain