Gene : Thecc1EG012883 T. cacao v1.1
Defline:  (1 of 1) PF00077 - Retroviral aspartyl protease (RVP) Genomic Order:  579
Name:  ? Thecc1EG012883 Secondary Identifier:  ? PAC:27448042
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG012883 0.5kb upstream 0.5kb upstream 1937 true scaffold_3: 7075785-7077721 Theobroma cacao
Thecc1EG012883 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7077222-7077721 Theobroma cacao
Thecc1EG012883 0.5kb downstream 0.5kb downstream 1937 true scaffold_3: 7075285-7077221 Theobroma cacao
Thecc1EG012883 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7075285-7075784 Theobroma cacao
Thecc1EG012883 1.0kb upstream 1.0kb upstream 2437 true scaffold_3: 7075785-7078221 Theobroma cacao
Thecc1EG012883 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7077222-7078221 Theobroma cacao
Thecc1EG012883 1.0kb downstream 1.0kb downstream 2437 true scaffold_3: 7074785-7077221 Theobroma cacao
Thecc1EG012883 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7074785-7075784 Theobroma cacao
Thecc1EG012883 2.0kb upstream 2.0kb upstream 3437 true scaffold_3: 7075785-7079221 Theobroma cacao
Thecc1EG012883 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7077222-7079221 Theobroma cacao
Thecc1EG012883 2.0kb downstream 2.0kb downstream 3437 true scaffold_3: 7073785-7077221 Theobroma cacao
Thecc1EG012883 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7073785-7075784 Theobroma cacao
Thecc1EG012883 5.0kb upstream 5.0kb upstream 6437 true scaffold_3: 7075785-7082221 Theobroma cacao
Thecc1EG012883 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7077222-7082221 Theobroma cacao
Thecc1EG012883 5.0kb downstream 5.0kb downstream 6437 true scaffold_3: 7070785-7077221 Theobroma cacao
Thecc1EG012883 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7070785-7075784 Theobroma cacao
Thecc1EG012883 10.0kb upstream 10.0kb upstream 11437 true scaffold_3: 7075785-7087221 Theobroma cacao
Thecc1EG012883 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7077222-7087221 Theobroma cacao
Thecc1EG012883 10.0kb downstream 10.0kb downstream 11437 true scaffold_3: 7065785-7077221 Theobroma cacao
Thecc1EG012883 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7065785-7075784 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121520756 5273 Angiosperm Singleton cluster - no MSA
123818167 5264 Brassicales-Malvales Singleton cluster - no MSA
124314489 5266 SBM Singleton cluster - no MSA
124163479 5268 Malvidae Singleton cluster - no MSA
123887314 5270 Rosid Singleton cluster - no MSA
123469797 5271 Pentapetalae Singleton cluster - no MSA
122505092 5272 Eudicot Singleton cluster - no MSA
120793562 5274 Embryophyte Singleton cluster - no MSA
122835165 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain