Gene : Thecc1EG013496 T. cacao v1.1
Defline:  (1 of 1) PF13952//PF13960//PF13963 - Domain of unknown function (DUF4216) (DUF4216) // Domain of unknown function (DUF4218) (DUF4218) // Transposase-associated domain (Transpos_assoc) Genomic Order:  727
Name:  ? Thecc1EG013496 Secondary Identifier:  ? PAC:27447407
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG013496 0.5kb upstream 0.5kb upstream 4533 true scaffold_3: 13596586-13601118 Theobroma cacao
Thecc1EG013496 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13600619-13601118 Theobroma cacao
Thecc1EG013496 0.5kb downstream 0.5kb downstream 4533 true scaffold_3: 13596086-13600618 Theobroma cacao
Thecc1EG013496 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13596086-13596585 Theobroma cacao
Thecc1EG013496 1.0kb upstream 1.0kb upstream 5033 true scaffold_3: 13596586-13601618 Theobroma cacao
Thecc1EG013496 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13600619-13601618 Theobroma cacao
Thecc1EG013496 1.0kb downstream 1.0kb downstream 5033 true scaffold_3: 13595586-13600618 Theobroma cacao
Thecc1EG013496 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13595586-13596585 Theobroma cacao
Thecc1EG013496 2.0kb upstream 2.0kb upstream 6033 true scaffold_3: 13596586-13602618 Theobroma cacao
Thecc1EG013496 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13600619-13602618 Theobroma cacao
Thecc1EG013496 2.0kb downstream 2.0kb downstream 6033 true scaffold_3: 13594586-13600618 Theobroma cacao
Thecc1EG013496 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13594586-13596585 Theobroma cacao
Thecc1EG013496 5.0kb upstream 5.0kb upstream 9033 true scaffold_3: 13596586-13605618 Theobroma cacao
Thecc1EG013496 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13600619-13605618 Theobroma cacao
Thecc1EG013496 5.0kb downstream 5.0kb downstream 9033 true scaffold_3: 13591586-13600618 Theobroma cacao
Thecc1EG013496 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13591586-13596585 Theobroma cacao
Thecc1EG013496 10.0kb upstream 10.0kb upstream 14033 true scaffold_3: 13596586-13610618 Theobroma cacao
Thecc1EG013496 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13600619-13610618 Theobroma cacao
Thecc1EG013496 10.0kb downstream 10.0kb downstream 14033 true scaffold_3: 13586586-13600618 Theobroma cacao
Thecc1EG013496 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13586586-13596585 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782039 5273 Angiosperm View MSA
123818052 5264 Brassicales-Malvales Singleton cluster - no MSA
124314378 5266 SBM Singleton cluster - no MSA
124163383 5268 Malvidae Singleton cluster - no MSA
123887225 5270 Rosid Singleton cluster - no MSA
123751654 5271 Pentapetalae View MSA
122774121 5272 Eudicot View MSA
121053582 5274 Embryophyte View MSA
123093599 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain