Gene : Thecc1EG013997 T. cacao v1.1
Defline:  (1 of 2) PTHR23012//PTHR23012:SF57 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Genomic Order:  903
Name:  ? Thecc1EG013997 Secondary Identifier:  ? PAC:27449115
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG013997 0.5kb upstream 0.5kb upstream 9321 true scaffold_3: 19132053-19141373 Theobroma cacao
Thecc1EG013997 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 19140874-19141373 Theobroma cacao
Thecc1EG013997 0.5kb downstream 0.5kb downstream 9321 true scaffold_3: 19131553-19140873 Theobroma cacao
Thecc1EG013997 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 19131553-19132052 Theobroma cacao
Thecc1EG013997 1.0kb upstream 1.0kb upstream 9821 true scaffold_3: 19132053-19141873 Theobroma cacao
Thecc1EG013997 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 19140874-19141873 Theobroma cacao
Thecc1EG013997 1.0kb downstream 1.0kb downstream 9821 true scaffold_3: 19131053-19140873 Theobroma cacao
Thecc1EG013997 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 19131053-19132052 Theobroma cacao
Thecc1EG013997 2.0kb upstream 2.0kb upstream 10821 true scaffold_3: 19132053-19142873 Theobroma cacao
Thecc1EG013997 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 19140874-19142873 Theobroma cacao
Thecc1EG013997 2.0kb downstream 2.0kb downstream 10821 true scaffold_3: 19130053-19140873 Theobroma cacao
Thecc1EG013997 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 19130053-19132052 Theobroma cacao
Thecc1EG013997 5.0kb upstream 5.0kb upstream 13821 true scaffold_3: 19132053-19145873 Theobroma cacao
Thecc1EG013997 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 19140874-19145873 Theobroma cacao
Thecc1EG013997 5.0kb downstream 5.0kb downstream 13821 true scaffold_3: 19127053-19140873 Theobroma cacao
Thecc1EG013997 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 19127053-19132052 Theobroma cacao
Thecc1EG013997 10.0kb upstream 10.0kb upstream 18821 true scaffold_3: 19132053-19150873 Theobroma cacao
Thecc1EG013997 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 19140874-19150873 Theobroma cacao
Thecc1EG013997 10.0kb downstream 10.0kb downstream 18821 true scaffold_3: 19122053-19140873 Theobroma cacao
Thecc1EG013997 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 19122053-19132052 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839450 5264 Brassicales-Malvales View MSA
124340031 5266 SBM View MSA
124251215 5268 Malvidae View MSA
124070525 5270 Rosid View MSA
123751414 5271 Pentapetalae View MSA
122787187 5272 Eudicot View MSA
122048569 5273 Angiosperm View MSA
121311024 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain