Gene : Thecc1EG014318 T. cacao v1.1
Defline:  (1 of 12) PF04833 - COBRA-like protein (COBRA) Genomic Order:  1088
Name:  ? Thecc1EG014318 Secondary Identifier:  ? PAC:27448495
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG014318 0.5kb upstream 0.5kb upstream 2015 true scaffold_3: 21476846-21478860 Theobroma cacao
Thecc1EG014318 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21478361-21478860 Theobroma cacao
Thecc1EG014318 0.5kb downstream 0.5kb downstream 2015 true scaffold_3: 21476346-21478360 Theobroma cacao
Thecc1EG014318 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21476346-21476845 Theobroma cacao
Thecc1EG014318 1.0kb upstream 1.0kb upstream 2515 true scaffold_3: 21476846-21479360 Theobroma cacao
Thecc1EG014318 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21478361-21479360 Theobroma cacao
Thecc1EG014318 1.0kb downstream 1.0kb downstream 2515 true scaffold_3: 21475846-21478360 Theobroma cacao
Thecc1EG014318 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21475846-21476845 Theobroma cacao
Thecc1EG014318 2.0kb upstream 2.0kb upstream 3515 true scaffold_3: 21476846-21480360 Theobroma cacao
Thecc1EG014318 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21478361-21480360 Theobroma cacao
Thecc1EG014318 2.0kb downstream 2.0kb downstream 3515 true scaffold_3: 21474846-21478360 Theobroma cacao
Thecc1EG014318 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21474846-21476845 Theobroma cacao
Thecc1EG014318 5.0kb upstream 5.0kb upstream 6515 true scaffold_3: 21476846-21483360 Theobroma cacao
Thecc1EG014318 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21478361-21483360 Theobroma cacao
Thecc1EG014318 5.0kb downstream 5.0kb downstream 6515 true scaffold_3: 21471846-21478360 Theobroma cacao
Thecc1EG014318 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21471846-21476845 Theobroma cacao
Thecc1EG014318 10.0kb upstream 10.0kb upstream 11515 true scaffold_3: 21476846-21488360 Theobroma cacao
Thecc1EG014318 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21478361-21488360 Theobroma cacao
Thecc1EG014318 10.0kb downstream 10.0kb downstream 11515 true scaffold_3: 21466846-21478360 Theobroma cacao
Thecc1EG014318 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21466846-21476845 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123818247 5264 Brassicales-Malvales Singleton cluster - no MSA
124314567 5266 SBM Singleton cluster - no MSA
124163550 5268 Malvidae Singleton cluster - no MSA
123887380 5270 Rosid Singleton cluster - no MSA
123751474 5271 Pentapetalae View MSA
122774032 5272 Eudicot View MSA
122041862 5273 Angiosperm View MSA
121309895 5274 Embryophyte View MSA
123347529 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain