Gene : Thecc1EG015055 T. cacao v1.1
Defline:  (1 of 2) 2.3.3.10 - Hydroxymethylglutaryl-CoA synthase / Hydroxymethylglutaryl coenzyme alpha-condensing enzyme Genomic Order:  1690
Name:  ? Thecc1EG015055 Secondary Identifier:  ? PAC:27450183
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5910 Theobroma cacao pathologic  
Tcacao PWY-922 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG015055 0.5kb upstream 0.5kb upstream 5430 true scaffold_3: 25954604-25960033 Theobroma cacao
Thecc1EG015055 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 25959534-25960033 Theobroma cacao
Thecc1EG015055 0.5kb downstream 0.5kb downstream 5430 true scaffold_3: 25954104-25959533 Theobroma cacao
Thecc1EG015055 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 25954104-25954603 Theobroma cacao
Thecc1EG015055 1.0kb upstream 1.0kb upstream 5930 true scaffold_3: 25954604-25960533 Theobroma cacao
Thecc1EG015055 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 25959534-25960533 Theobroma cacao
Thecc1EG015055 1.0kb downstream 1.0kb downstream 5930 true scaffold_3: 25953604-25959533 Theobroma cacao
Thecc1EG015055 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 25953604-25954603 Theobroma cacao
Thecc1EG015055 2.0kb upstream 2.0kb upstream 6930 true scaffold_3: 25954604-25961533 Theobroma cacao
Thecc1EG015055 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 25959534-25961533 Theobroma cacao
Thecc1EG015055 2.0kb downstream 2.0kb downstream 6930 true scaffold_3: 25952604-25959533 Theobroma cacao
Thecc1EG015055 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 25952604-25954603 Theobroma cacao
Thecc1EG015055 5.0kb upstream 5.0kb upstream 9930 true scaffold_3: 25954604-25964533 Theobroma cacao
Thecc1EG015055 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 25959534-25964533 Theobroma cacao
Thecc1EG015055 5.0kb downstream 5.0kb downstream 9930 true scaffold_3: 25949604-25959533 Theobroma cacao
Thecc1EG015055 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 25949604-25954603 Theobroma cacao
Thecc1EG015055 10.0kb upstream 10.0kb upstream 14930 true scaffold_3: 25954604-25969533 Theobroma cacao
Thecc1EG015055 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 25959534-25969533 Theobroma cacao
Thecc1EG015055 10.0kb downstream 10.0kb downstream 14930 true scaffold_3: 25944604-25959533 Theobroma cacao
Thecc1EG015055 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 25944604-25954603 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839645 5264 Brassicales-Malvales View MSA
124341389 5266 SBM View MSA
124241910 5268 Malvidae View MSA
124060634 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain