Gene : Thecc1EG015230 T. cacao v1.1
Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1835
Name:  ? Thecc1EG015230 Secondary Identifier:  ? PAC:27447276
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG015230 0.5kb upstream 0.5kb upstream 6995 true scaffold_3: 26913097-26920091 Theobroma cacao
Thecc1EG015230 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 26913097-26913596 Theobroma cacao
Thecc1EG015230 0.5kb downstream 0.5kb downstream 6995 true scaffold_3: 26913597-26920591 Theobroma cacao
Thecc1EG015230 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 26920092-26920591 Theobroma cacao
Thecc1EG015230 1.0kb upstream 1.0kb upstream 7495 true scaffold_3: 26912597-26920091 Theobroma cacao
Thecc1EG015230 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 26912597-26913596 Theobroma cacao
Thecc1EG015230 1.0kb downstream 1.0kb downstream 7495 true scaffold_3: 26913597-26921091 Theobroma cacao
Thecc1EG015230 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 26920092-26921091 Theobroma cacao
Thecc1EG015230 2.0kb upstream 2.0kb upstream 8495 true scaffold_3: 26911597-26920091 Theobroma cacao
Thecc1EG015230 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 26911597-26913596 Theobroma cacao
Thecc1EG015230 2.0kb downstream 2.0kb downstream 8495 true scaffold_3: 26913597-26922091 Theobroma cacao
Thecc1EG015230 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 26920092-26922091 Theobroma cacao
Thecc1EG015230 5.0kb upstream 5.0kb upstream 11495 true scaffold_3: 26908597-26920091 Theobroma cacao
Thecc1EG015230 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 26908597-26913596 Theobroma cacao
Thecc1EG015230 5.0kb downstream 5.0kb downstream 11495 true scaffold_3: 26913597-26925091 Theobroma cacao
Thecc1EG015230 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 26920092-26925091 Theobroma cacao
Thecc1EG015230 10.0kb upstream 10.0kb upstream 16495 true scaffold_3: 26903597-26920091 Theobroma cacao
Thecc1EG015230 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 26903597-26913596 Theobroma cacao
Thecc1EG015230 10.0kb downstream 10.0kb downstream 16495 true scaffold_3: 26913597-26930091 Theobroma cacao
Thecc1EG015230 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 26920092-26930091 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834383 5264 Brassicales-Malvales View MSA
124344312 5266 SBM View MSA
124238482 5268 Malvidae View MSA
124067863 5270 Rosid View MSA
123737640 5271 Pentapetalae View MSA
122793581 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain