Gene : Thecc1EG015272 T. cacao v1.1
Defline:  (1 of 1) K03949 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5 (NDUFA5) Genomic Order:  1870
Name:  ? Thecc1EG015272 Secondary Identifier:  ? PAC:27450214
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-3781 Theobroma cacao pathologic  
Tcacao PWY-4302 Theobroma cacao pathologic  
Tcacao PWY-5083 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG015272 0.5kb upstream 0.5kb upstream 2405 true scaffold_3: 27102352-27104756 Theobroma cacao
Thecc1EG015272 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 27102352-27102851 Theobroma cacao
Thecc1EG015272 0.5kb downstream 0.5kb downstream 2405 true scaffold_3: 27102852-27105256 Theobroma cacao
Thecc1EG015272 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 27104757-27105256 Theobroma cacao
Thecc1EG015272 1.0kb upstream 1.0kb upstream 2905 true scaffold_3: 27101852-27104756 Theobroma cacao
Thecc1EG015272 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 27101852-27102851 Theobroma cacao
Thecc1EG015272 1.0kb downstream 1.0kb downstream 2905 true scaffold_3: 27102852-27105756 Theobroma cacao
Thecc1EG015272 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 27104757-27105756 Theobroma cacao
Thecc1EG015272 2.0kb upstream 2.0kb upstream 3905 true scaffold_3: 27100852-27104756 Theobroma cacao
Thecc1EG015272 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 27100852-27102851 Theobroma cacao
Thecc1EG015272 2.0kb downstream 2.0kb downstream 3905 true scaffold_3: 27102852-27106756 Theobroma cacao
Thecc1EG015272 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 27104757-27106756 Theobroma cacao
Thecc1EG015272 5.0kb upstream 5.0kb upstream 6905 true scaffold_3: 27097852-27104756 Theobroma cacao
Thecc1EG015272 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 27097852-27102851 Theobroma cacao
Thecc1EG015272 5.0kb downstream 5.0kb downstream 6905 true scaffold_3: 27102852-27109756 Theobroma cacao
Thecc1EG015272 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 27104757-27109756 Theobroma cacao
Thecc1EG015272 10.0kb upstream 10.0kb upstream 11905 true scaffold_3: 27092852-27104756 Theobroma cacao
Thecc1EG015272 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 27092852-27102851 Theobroma cacao
Thecc1EG015272 10.0kb downstream 10.0kb downstream 11905 true scaffold_3: 27102852-27114756 Theobroma cacao
Thecc1EG015272 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 27104757-27114756 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838702 5264 Brassicales-Malvales View MSA
124341816 5266 SBM View MSA
124240898 5268 Malvidae View MSA
124062156 5270 Rosid View MSA
123746684 5271 Pentapetalae View MSA
122793843 5272 Eudicot View MSA
122046813 5273 Angiosperm View MSA
121348614 5274 Embryophyte View MSA
123425136 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain