Gene : Thecc1EG015367 T. cacao v1.1
Defline:  (1 of 1) 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Genomic Order:  1953
Name:  ? Thecc1EG015367 Secondary Identifier:  ? PAC:27446846
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao ARGSPECAT-PWY Theobroma cacao pathologic  
Tcacao BSUBPOLYAMSYN-PWY Theobroma cacao pathologic  
Tcacao POLYAMINSYN3-PWY Theobroma cacao pathologic  
Tcacao PWY-7528 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG015367 0.5kb upstream 0.5kb upstream 6250 true scaffold_3: 27591112-27597361 Theobroma cacao
Thecc1EG015367 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 27596862-27597361 Theobroma cacao
Thecc1EG015367 0.5kb downstream 0.5kb downstream 6250 true scaffold_3: 27590612-27596861 Theobroma cacao
Thecc1EG015367 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 27590612-27591111 Theobroma cacao
Thecc1EG015367 1.0kb upstream 1.0kb upstream 6750 true scaffold_3: 27591112-27597861 Theobroma cacao
Thecc1EG015367 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 27596862-27597861 Theobroma cacao
Thecc1EG015367 1.0kb downstream 1.0kb downstream 6750 true scaffold_3: 27590112-27596861 Theobroma cacao
Thecc1EG015367 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 27590112-27591111 Theobroma cacao
Thecc1EG015367 2.0kb upstream 2.0kb upstream 7750 true scaffold_3: 27591112-27598861 Theobroma cacao
Thecc1EG015367 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 27596862-27598861 Theobroma cacao
Thecc1EG015367 2.0kb downstream 2.0kb downstream 7750 true scaffold_3: 27589112-27596861 Theobroma cacao
Thecc1EG015367 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 27589112-27591111 Theobroma cacao
Thecc1EG015367 5.0kb upstream 5.0kb upstream 10750 true scaffold_3: 27591112-27601861 Theobroma cacao
Thecc1EG015367 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 27596862-27601861 Theobroma cacao
Thecc1EG015367 5.0kb downstream 5.0kb downstream 10750 true scaffold_3: 27586112-27596861 Theobroma cacao
Thecc1EG015367 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 27586112-27591111 Theobroma cacao
Thecc1EG015367 10.0kb upstream 10.0kb upstream 15750 true scaffold_3: 27591112-27606861 Theobroma cacao
Thecc1EG015367 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 27596862-27606861 Theobroma cacao
Thecc1EG015367 10.0kb downstream 10.0kb downstream 15750 true scaffold_3: 27581112-27596861 Theobroma cacao
Thecc1EG015367 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 27581112-27591111 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829244 5264 Brassicales-Malvales View MSA
124341220 5266 SBM View MSA
124251479 5268 Malvidae View MSA
124062886 5270 Rosid View MSA
123739892 5271 Pentapetalae View MSA
122785821 5272 Eudicot View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain