Gene : Thecc1EG016170 T. cacao v1.1

Defline:  (1 of 1) K14295 - nuclear pore complex protein Nup50 (NUP50, NPAP60) Genomic Order:  2670
Name:  ? Thecc1EG016170 Secondary Identifier:  ? PAC:27449425

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016170 0.5kb upstream 0.5kb upstream 5505 true scaffold_3: 31648715-31654219 Theobroma cacao
Thecc1EG016170 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 31653720-31654219 Theobroma cacao
Thecc1EG016170 0.5kb downstream 0.5kb downstream 5505 true scaffold_3: 31648215-31653719 Theobroma cacao
Thecc1EG016170 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 31648215-31648714 Theobroma cacao
Thecc1EG016170 1.0kb upstream 1.0kb upstream 6005 true scaffold_3: 31648715-31654719 Theobroma cacao
Thecc1EG016170 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 31653720-31654719 Theobroma cacao
Thecc1EG016170 1.0kb downstream 1.0kb downstream 6005 true scaffold_3: 31647715-31653719 Theobroma cacao
Thecc1EG016170 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 31647715-31648714 Theobroma cacao
Thecc1EG016170 2.0kb upstream 2.0kb upstream 7005 true scaffold_3: 31648715-31655719 Theobroma cacao
Thecc1EG016170 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 31653720-31655719 Theobroma cacao
Thecc1EG016170 2.0kb downstream 2.0kb downstream 7005 true scaffold_3: 31646715-31653719 Theobroma cacao
Thecc1EG016170 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 31646715-31648714 Theobroma cacao
Thecc1EG016170 5.0kb upstream 5.0kb upstream 10005 true scaffold_3: 31648715-31658719 Theobroma cacao
Thecc1EG016170 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 31653720-31658719 Theobroma cacao
Thecc1EG016170 5.0kb downstream 5.0kb downstream 10005 true scaffold_3: 31643715-31653719 Theobroma cacao
Thecc1EG016170 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 31643715-31648714 Theobroma cacao
Thecc1EG016170 10.0kb upstream 10.0kb upstream 15005 true scaffold_3: 31648715-31663719 Theobroma cacao
Thecc1EG016170 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 31653720-31663719 Theobroma cacao
Thecc1EG016170 10.0kb downstream 10.0kb downstream 15005 true scaffold_3: 31638715-31653719 Theobroma cacao
Thecc1EG016170 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 31638715-31648714 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829340 5264 Brassicales-Malvales View MSA
124338710 5266 SBM View MSA
124240923 5268 Malvidae View MSA
124070591 5270 Rosid View MSA
123739047 5271 Pentapetalae View MSA
122795467 5272 Eudicot View MSA
122048629 5273 Angiosperm View MSA
121344794 5274 Embryophyte View MSA
123425860 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain