Gene : Thecc1EG016163 T. cacao v1.1
Defline:  (1 of 2) 2.3.3.10 - Hydroxymethylglutaryl-CoA synthase / Hydroxymethylglutaryl coenzyme alpha-condensing enzyme Genomic Order:  2663
Name:  ? Thecc1EG016163 Secondary Identifier:  ? PAC:27448942
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5910 Theobroma cacao pathologic  
Tcacao PWY-922 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016163 0.5kb upstream 0.5kb upstream 5334 true scaffold_3: 31583609-31588942 Theobroma cacao
Thecc1EG016163 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 31588443-31588942 Theobroma cacao
Thecc1EG016163 0.5kb downstream 0.5kb downstream 5334 true scaffold_3: 31583109-31588442 Theobroma cacao
Thecc1EG016163 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 31583109-31583608 Theobroma cacao
Thecc1EG016163 1.0kb upstream 1.0kb upstream 5834 true scaffold_3: 31583609-31589442 Theobroma cacao
Thecc1EG016163 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 31588443-31589442 Theobroma cacao
Thecc1EG016163 1.0kb downstream 1.0kb downstream 5834 true scaffold_3: 31582609-31588442 Theobroma cacao
Thecc1EG016163 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 31582609-31583608 Theobroma cacao
Thecc1EG016163 2.0kb upstream 2.0kb upstream 6834 true scaffold_3: 31583609-31590442 Theobroma cacao
Thecc1EG016163 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 31588443-31590442 Theobroma cacao
Thecc1EG016163 2.0kb downstream 2.0kb downstream 6834 true scaffold_3: 31581609-31588442 Theobroma cacao
Thecc1EG016163 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 31581609-31583608 Theobroma cacao
Thecc1EG016163 5.0kb upstream 5.0kb upstream 9834 true scaffold_3: 31583609-31593442 Theobroma cacao
Thecc1EG016163 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 31588443-31593442 Theobroma cacao
Thecc1EG016163 5.0kb downstream 5.0kb downstream 9834 true scaffold_3: 31578609-31588442 Theobroma cacao
Thecc1EG016163 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 31578609-31583608 Theobroma cacao
Thecc1EG016163 10.0kb upstream 10.0kb upstream 14834 true scaffold_3: 31583609-31598442 Theobroma cacao
Thecc1EG016163 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 31588443-31598442 Theobroma cacao
Thecc1EG016163 10.0kb downstream 10.0kb downstream 14834 true scaffold_3: 31573609-31588442 Theobroma cacao
Thecc1EG016163 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 31573609-31583608 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839645 5264 Brassicales-Malvales View MSA
124341389 5266 SBM View MSA
124241910 5268 Malvidae View MSA
124060634 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain