Gene : Thecc1EG016066 T. cacao v1.1
Defline:  (1 of 1) PTHR10638//PTHR10638:SF38 - COPPER AMINE OXIDASE // PRIMARY AMINE OXIDASE Genomic Order:  2575
Name:  ? Thecc1EG016066 Secondary Identifier:  ? PAC:27448651
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5751 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016066 0.5kb upstream 0.5kb upstream 3875 true scaffold_3: 31108983-31112857 Theobroma cacao
Thecc1EG016066 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 31112358-31112857 Theobroma cacao
Thecc1EG016066 0.5kb downstream 0.5kb downstream 3875 true scaffold_3: 31108483-31112357 Theobroma cacao
Thecc1EG016066 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 31108483-31108982 Theobroma cacao
Thecc1EG016066 1.0kb upstream 1.0kb upstream 4375 true scaffold_3: 31108983-31113357 Theobroma cacao
Thecc1EG016066 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 31112358-31113357 Theobroma cacao
Thecc1EG016066 1.0kb downstream 1.0kb downstream 4375 true scaffold_3: 31107983-31112357 Theobroma cacao
Thecc1EG016066 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 31107983-31108982 Theobroma cacao
Thecc1EG016066 2.0kb upstream 2.0kb upstream 5375 true scaffold_3: 31108983-31114357 Theobroma cacao
Thecc1EG016066 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 31112358-31114357 Theobroma cacao
Thecc1EG016066 2.0kb downstream 2.0kb downstream 5375 true scaffold_3: 31106983-31112357 Theobroma cacao
Thecc1EG016066 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 31106983-31108982 Theobroma cacao
Thecc1EG016066 5.0kb upstream 5.0kb upstream 8375 true scaffold_3: 31108983-31117357 Theobroma cacao
Thecc1EG016066 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 31112358-31117357 Theobroma cacao
Thecc1EG016066 5.0kb downstream 5.0kb downstream 8375 true scaffold_3: 31103983-31112357 Theobroma cacao
Thecc1EG016066 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 31103983-31108982 Theobroma cacao
Thecc1EG016066 10.0kb upstream 10.0kb upstream 13375 true scaffold_3: 31108983-31122357 Theobroma cacao
Thecc1EG016066 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 31112358-31122357 Theobroma cacao
Thecc1EG016066 10.0kb downstream 10.0kb downstream 13375 true scaffold_3: 31098983-31112357 Theobroma cacao
Thecc1EG016066 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 31098983-31108982 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123818278 5264 Brassicales-Malvales Singleton cluster - no MSA
124314595 5266 SBM Singleton cluster - no MSA
124163576 5268 Malvidae Singleton cluster - no MSA
123887405 5270 Rosid Singleton cluster - no MSA
123751770 5271 Pentapetalae View MSA
122795506 5272 Eudicot View MSA
122049910 5273 Angiosperm View MSA
123428923 5275 Viridiplantae View MSA
121349913 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain