Gene : Thecc1EG016249 T. cacao v1.1
Defline:  (1 of 1) PTHR11588//PTHR11588:SF124 - TUBULIN // SUBFAMILY NOT NAMED Genomic Order:  2742
Name:  ? Thecc1EG016249 Secondary Identifier:  ? PAC:27448693
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5695 Theobroma cacao pathologic  
Tcacao PWY-6608 Theobroma cacao pathologic  
Tcacao PWY-6609 Theobroma cacao pathologic  
Tcacao PWY-7179 Theobroma cacao pathologic  
Tcacao SALVADEHYPOX-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016249 0.5kb upstream 0.5kb upstream 3028 true scaffold_3: 32038045-32041072 Theobroma cacao
Thecc1EG016249 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 32040573-32041072 Theobroma cacao
Thecc1EG016249 0.5kb downstream 0.5kb downstream 3028 true scaffold_3: 32037545-32040572 Theobroma cacao
Thecc1EG016249 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 32037545-32038044 Theobroma cacao
Thecc1EG016249 1.0kb upstream 1.0kb upstream 3528 true scaffold_3: 32038045-32041572 Theobroma cacao
Thecc1EG016249 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 32040573-32041572 Theobroma cacao
Thecc1EG016249 1.0kb downstream 1.0kb downstream 3528 true scaffold_3: 32037045-32040572 Theobroma cacao
Thecc1EG016249 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 32037045-32038044 Theobroma cacao
Thecc1EG016249 2.0kb upstream 2.0kb upstream 4528 true scaffold_3: 32038045-32042572 Theobroma cacao
Thecc1EG016249 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 32040573-32042572 Theobroma cacao
Thecc1EG016249 2.0kb downstream 2.0kb downstream 4528 true scaffold_3: 32036045-32040572 Theobroma cacao
Thecc1EG016249 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 32036045-32038044 Theobroma cacao
Thecc1EG016249 5.0kb upstream 5.0kb upstream 7528 true scaffold_3: 32038045-32045572 Theobroma cacao
Thecc1EG016249 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 32040573-32045572 Theobroma cacao
Thecc1EG016249 5.0kb downstream 5.0kb downstream 7528 true scaffold_3: 32033045-32040572 Theobroma cacao
Thecc1EG016249 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 32033045-32038044 Theobroma cacao
Thecc1EG016249 10.0kb upstream 10.0kb upstream 12528 true scaffold_3: 32038045-32050572 Theobroma cacao
Thecc1EG016249 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 32040573-32050572 Theobroma cacao
Thecc1EG016249 10.0kb downstream 10.0kb downstream 12528 true scaffold_3: 32028045-32040572 Theobroma cacao
Thecc1EG016249 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 32028045-32038044 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123825915 5264 Brassicales-Malvales View MSA
124348107 5266 SBM View MSA
124245806 5268 Malvidae View MSA
124071033 5270 Rosid View MSA
123752515 5271 Pentapetalae View MSA
122795676 5272 Eudicot View MSA
122049584 5273 Angiosperm View MSA
121311488 5274 Embryophyte View MSA
123348779 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain