Gene : Thecc1EG016244 T. cacao v1.1
Defline:  (1 of 1) PTHR33317//PTHR33317:SF1 - FAMILY NOT NAMED // POLYNUCLEOTIDYL TRANSFERASE/ RIBONUCLEASE H-LIKE PROTEIN Genomic Order:  2738
Name:  ? Thecc1EG016244 Secondary Identifier:  ? PAC:27448343
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016244 0.5kb upstream 0.5kb upstream 4668 true scaffold_3: 32007391-32012058 Theobroma cacao
Thecc1EG016244 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 32011559-32012058 Theobroma cacao
Thecc1EG016244 0.5kb downstream 0.5kb downstream 4668 true scaffold_3: 32006891-32011558 Theobroma cacao
Thecc1EG016244 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 32006891-32007390 Theobroma cacao
Thecc1EG016244 1.0kb upstream 1.0kb upstream 5168 true scaffold_3: 32007391-32012558 Theobroma cacao
Thecc1EG016244 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 32011559-32012558 Theobroma cacao
Thecc1EG016244 1.0kb downstream 1.0kb downstream 5168 true scaffold_3: 32006391-32011558 Theobroma cacao
Thecc1EG016244 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 32006391-32007390 Theobroma cacao
Thecc1EG016244 2.0kb upstream 2.0kb upstream 6168 true scaffold_3: 32007391-32013558 Theobroma cacao
Thecc1EG016244 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 32011559-32013558 Theobroma cacao
Thecc1EG016244 2.0kb downstream 2.0kb downstream 6168 true scaffold_3: 32005391-32011558 Theobroma cacao
Thecc1EG016244 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 32005391-32007390 Theobroma cacao
Thecc1EG016244 5.0kb upstream 5.0kb upstream 9168 true scaffold_3: 32007391-32016558 Theobroma cacao
Thecc1EG016244 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 32011559-32016558 Theobroma cacao
Thecc1EG016244 5.0kb downstream 5.0kb downstream 9168 true scaffold_3: 32002391-32011558 Theobroma cacao
Thecc1EG016244 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 32002391-32007390 Theobroma cacao
Thecc1EG016244 10.0kb upstream 10.0kb upstream 14168 true scaffold_3: 32007391-32021558 Theobroma cacao
Thecc1EG016244 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 32011559-32021558 Theobroma cacao
Thecc1EG016244 10.0kb downstream 10.0kb downstream 14168 true scaffold_3: 31997391-32011558 Theobroma cacao
Thecc1EG016244 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 31997391-32007390 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830675 5264 Brassicales-Malvales View MSA
124342824 5266 SBM View MSA
124240635 5268 Malvidae View MSA
124067279 5270 Rosid View MSA
123746369 5271 Pentapetalae View MSA
122785614 5272 Eudicot View MSA
122048036 5273 Angiosperm View MSA
121349861 5274 Embryophyte View MSA
123381473 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain