Gene : Thecc1EG016239 T. cacao v1.1
Defline:  (1 of 1) PTHR11260:SF220 - GST-CONTAINING FLYWCH ZINC-FINGER PROTEIN Genomic Order:  2733
Name:  ? Thecc1EG016239 Secondary Identifier:  ? PAC:27447089
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6842 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016239 0.5kb upstream 0.5kb upstream 4142 true scaffold_3: 31988858-31992999 Theobroma cacao
Thecc1EG016239 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 31988858-31989357 Theobroma cacao
Thecc1EG016239 0.5kb downstream 0.5kb downstream 4142 true scaffold_3: 31989358-31993499 Theobroma cacao
Thecc1EG016239 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 31993000-31993499 Theobroma cacao
Thecc1EG016239 1.0kb upstream 1.0kb upstream 4642 true scaffold_3: 31988358-31992999 Theobroma cacao
Thecc1EG016239 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 31988358-31989357 Theobroma cacao
Thecc1EG016239 1.0kb downstream 1.0kb downstream 4642 true scaffold_3: 31989358-31993999 Theobroma cacao
Thecc1EG016239 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 31993000-31993999 Theobroma cacao
Thecc1EG016239 2.0kb upstream 2.0kb upstream 5642 true scaffold_3: 31987358-31992999 Theobroma cacao
Thecc1EG016239 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 31987358-31989357 Theobroma cacao
Thecc1EG016239 2.0kb downstream 2.0kb downstream 5642 true scaffold_3: 31989358-31994999 Theobroma cacao
Thecc1EG016239 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 31993000-31994999 Theobroma cacao
Thecc1EG016239 5.0kb upstream 5.0kb upstream 8642 true scaffold_3: 31984358-31992999 Theobroma cacao
Thecc1EG016239 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 31984358-31989357 Theobroma cacao
Thecc1EG016239 5.0kb downstream 5.0kb downstream 8642 true scaffold_3: 31989358-31997999 Theobroma cacao
Thecc1EG016239 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 31993000-31997999 Theobroma cacao
Thecc1EG016239 10.0kb upstream 10.0kb upstream 13642 true scaffold_3: 31979358-31992999 Theobroma cacao
Thecc1EG016239 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 31979358-31989357 Theobroma cacao
Thecc1EG016239 10.0kb downstream 10.0kb downstream 13642 true scaffold_3: 31989358-32002999 Theobroma cacao
Thecc1EG016239 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 31993000-32002999 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040873 5273 Angiosperm View MSA
123817994 5264 Brassicales-Malvales Singleton cluster - no MSA
124314321 5266 SBM Singleton cluster - no MSA
124249393 5268 Malvidae View MSA
123952361 5270 Rosid View MSA
123751759 5271 Pentapetalae View MSA
122789366 5272 Eudicot View MSA
121350998 5274 Embryophyte View MSA
123428193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain