Gene : Thecc1EG016205 T. cacao v1.1
Defline:  (1 of 3) 2.1.1.257 - tRNA (pseudouridine(54)-N(1))-methyltransferase / M(1)-Psi methyltransferase Genomic Order:  2703
Name:  ? Thecc1EG016205 Secondary Identifier:  ? PAC:27450777
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016205 0.5kb upstream 0.5kb upstream 1845 true scaffold_3: 31840363-31842207 Theobroma cacao
Thecc1EG016205 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 31841708-31842207 Theobroma cacao
Thecc1EG016205 0.5kb downstream 0.5kb downstream 1845 true scaffold_3: 31839863-31841707 Theobroma cacao
Thecc1EG016205 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 31839863-31840362 Theobroma cacao
Thecc1EG016205 1.0kb upstream 1.0kb upstream 2345 true scaffold_3: 31840363-31842707 Theobroma cacao
Thecc1EG016205 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 31841708-31842707 Theobroma cacao
Thecc1EG016205 1.0kb downstream 1.0kb downstream 2345 true scaffold_3: 31839363-31841707 Theobroma cacao
Thecc1EG016205 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 31839363-31840362 Theobroma cacao
Thecc1EG016205 2.0kb upstream 2.0kb upstream 3345 true scaffold_3: 31840363-31843707 Theobroma cacao
Thecc1EG016205 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 31841708-31843707 Theobroma cacao
Thecc1EG016205 2.0kb downstream 2.0kb downstream 3345 true scaffold_3: 31838363-31841707 Theobroma cacao
Thecc1EG016205 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 31838363-31840362 Theobroma cacao
Thecc1EG016205 5.0kb upstream 5.0kb upstream 6345 true scaffold_3: 31840363-31846707 Theobroma cacao
Thecc1EG016205 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 31841708-31846707 Theobroma cacao
Thecc1EG016205 5.0kb downstream 5.0kb downstream 6345 true scaffold_3: 31835363-31841707 Theobroma cacao
Thecc1EG016205 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 31835363-31840362 Theobroma cacao
Thecc1EG016205 10.0kb upstream 10.0kb upstream 11345 true scaffold_3: 31840363-31851707 Theobroma cacao
Thecc1EG016205 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 31841708-31851707 Theobroma cacao
Thecc1EG016205 10.0kb downstream 10.0kb downstream 11345 true scaffold_3: 31830363-31841707 Theobroma cacao
Thecc1EG016205 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 31830363-31840362 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123818673 5264 Brassicales-Malvales Singleton cluster - no MSA
124314973 5266 SBM Singleton cluster - no MSA
124248812 5268 Malvidae View MSA
124038096 5270 Rosid View MSA
123749345 5271 Pentapetalae View MSA
122789424 5272 Eudicot View MSA
122046063 5273 Angiosperm View MSA
121345370 5274 Embryophyte View MSA
123425050 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain