Gene : Thecc1EG016507 T. cacao v1.1
Defline:  (1 of 7) PTHR13301//PTHR13301:SF51 - X-BOX TRANSCRIPTION FACTOR-RELATED // CELLULOSE SYNTHASE-LIKE PROTEIN G1-RELATED Genomic Order:  2972
Name:  ? Thecc1EG016507 Secondary Identifier:  ? PAC:27449779
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1001 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016507 0.5kb upstream 0.5kb upstream 4273 true scaffold_3: 33189457-33193729 Theobroma cacao
Thecc1EG016507 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 33189457-33189956 Theobroma cacao
Thecc1EG016507 0.5kb downstream 0.5kb downstream 4273 true scaffold_3: 33189957-33194229 Theobroma cacao
Thecc1EG016507 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 33193730-33194229 Theobroma cacao
Thecc1EG016507 1.0kb upstream 1.0kb upstream 4773 true scaffold_3: 33188957-33193729 Theobroma cacao
Thecc1EG016507 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 33188957-33189956 Theobroma cacao
Thecc1EG016507 1.0kb downstream 1.0kb downstream 4773 true scaffold_3: 33189957-33194729 Theobroma cacao
Thecc1EG016507 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 33193730-33194729 Theobroma cacao
Thecc1EG016507 2.0kb upstream 2.0kb upstream 5773 true scaffold_3: 33187957-33193729 Theobroma cacao
Thecc1EG016507 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 33187957-33189956 Theobroma cacao
Thecc1EG016507 2.0kb downstream 2.0kb downstream 5773 true scaffold_3: 33189957-33195729 Theobroma cacao
Thecc1EG016507 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 33193730-33195729 Theobroma cacao
Thecc1EG016507 5.0kb upstream 5.0kb upstream 8773 true scaffold_3: 33184957-33193729 Theobroma cacao
Thecc1EG016507 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 33184957-33189956 Theobroma cacao
Thecc1EG016507 5.0kb downstream 5.0kb downstream 8773 true scaffold_3: 33189957-33198729 Theobroma cacao
Thecc1EG016507 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 33193730-33198729 Theobroma cacao
Thecc1EG016507 10.0kb upstream 10.0kb upstream 13773 true scaffold_3: 33179957-33193729 Theobroma cacao
Thecc1EG016507 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 33179957-33189956 Theobroma cacao
Thecc1EG016507 10.0kb downstream 10.0kb downstream 13773 true scaffold_3: 33189957-33203729 Theobroma cacao
Thecc1EG016507 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 33193730-33203729 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827189 5264 Brassicales-Malvales View MSA
124321365 5266 SBM View MSA
124254069 5268 Malvidae View MSA
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain