Gene : Thecc1EG016506 T. cacao v1.1
Defline:  (1 of 7) PTHR13301//PTHR13301:SF51 - X-BOX TRANSCRIPTION FACTOR-RELATED // CELLULOSE SYNTHASE-LIKE PROTEIN G1-RELATED Genomic Order:  2971
Name:  ? Thecc1EG016506 Secondary Identifier:  ? PAC:27448670
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1001 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016506 0.5kb upstream 0.5kb upstream 9059 true scaffold_3: 33179072-33188130 Theobroma cacao
Thecc1EG016506 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 33179072-33179571 Theobroma cacao
Thecc1EG016506 0.5kb downstream 0.5kb downstream 9059 true scaffold_3: 33179572-33188630 Theobroma cacao
Thecc1EG016506 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 33188131-33188630 Theobroma cacao
Thecc1EG016506 1.0kb upstream 1.0kb upstream 9559 true scaffold_3: 33178572-33188130 Theobroma cacao
Thecc1EG016506 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 33178572-33179571 Theobroma cacao
Thecc1EG016506 1.0kb downstream 1.0kb downstream 9559 true scaffold_3: 33179572-33189130 Theobroma cacao
Thecc1EG016506 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 33188131-33189130 Theobroma cacao
Thecc1EG016506 2.0kb upstream 2.0kb upstream 10559 true scaffold_3: 33177572-33188130 Theobroma cacao
Thecc1EG016506 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 33177572-33179571 Theobroma cacao
Thecc1EG016506 2.0kb downstream 2.0kb downstream 10559 true scaffold_3: 33179572-33190130 Theobroma cacao
Thecc1EG016506 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 33188131-33190130 Theobroma cacao
Thecc1EG016506 5.0kb upstream 5.0kb upstream 13559 true scaffold_3: 33174572-33188130 Theobroma cacao
Thecc1EG016506 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 33174572-33179571 Theobroma cacao
Thecc1EG016506 5.0kb downstream 5.0kb downstream 13559 true scaffold_3: 33179572-33193130 Theobroma cacao
Thecc1EG016506 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 33188131-33193130 Theobroma cacao
Thecc1EG016506 10.0kb upstream 10.0kb upstream 18559 true scaffold_3: 33169572-33188130 Theobroma cacao
Thecc1EG016506 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 33169572-33179571 Theobroma cacao
Thecc1EG016506 10.0kb downstream 10.0kb downstream 18559 true scaffold_3: 33179572-33198130 Theobroma cacao
Thecc1EG016506 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 33188131-33198130 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840606 5264 Brassicales-Malvales View MSA
124346924 5266 SBM View MSA
124240954 5268 Malvidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain