Gene : Thecc1EG016778 T. cacao v1.1
Defline:  (1 of 3) 1.1.1.42 - Isocitrate dehydrogenase (NADP(+)) / oxalosuccinate carboxylase Genomic Order:  11
Name:  ? Thecc1EG016778 Secondary Identifier:  ? PAC:27455617
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6549 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016778 0.5kb upstream 0.5kb upstream 20889 true scaffold_4: 118038-138926 Theobroma cacao
Thecc1EG016778 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 138427-138926 Theobroma cacao
Thecc1EG016778 0.5kb downstream 0.5kb downstream 20889 true scaffold_4: 117538-138426 Theobroma cacao
Thecc1EG016778 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 117538-118037 Theobroma cacao
Thecc1EG016778 1.0kb upstream 1.0kb upstream 21389 true scaffold_4: 118038-139426 Theobroma cacao
Thecc1EG016778 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 138427-139426 Theobroma cacao
Thecc1EG016778 1.0kb downstream 1.0kb downstream 21389 true scaffold_4: 117038-138426 Theobroma cacao
Thecc1EG016778 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 117038-118037 Theobroma cacao
Thecc1EG016778 2.0kb upstream 2.0kb upstream 22389 true scaffold_4: 118038-140426 Theobroma cacao
Thecc1EG016778 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 138427-140426 Theobroma cacao
Thecc1EG016778 2.0kb downstream 2.0kb downstream 22389 true scaffold_4: 116038-138426 Theobroma cacao
Thecc1EG016778 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 116038-118037 Theobroma cacao
Thecc1EG016778 5.0kb upstream 5.0kb upstream 25389 true scaffold_4: 118038-143426 Theobroma cacao
Thecc1EG016778 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 138427-143426 Theobroma cacao
Thecc1EG016778 5.0kb downstream 5.0kb downstream 25389 true scaffold_4: 113038-138426 Theobroma cacao
Thecc1EG016778 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 113038-118037 Theobroma cacao
Thecc1EG016778 10.0kb upstream 10.0kb upstream 30389 true scaffold_4: 118038-148426 Theobroma cacao
Thecc1EG016778 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 138427-148426 Theobroma cacao
Thecc1EG016778 10.0kb downstream 10.0kb downstream 30389 true scaffold_4: 108038-138426 Theobroma cacao
Thecc1EG016778 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 108038-118037 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123836810 5264 Brassicales-Malvales View MSA
124343936 5266 SBM View MSA
124253615 5268 Malvidae View MSA
124070230 5270 Rosid View MSA
123744673 5271 Pentapetalae View MSA
122792686 5272 Eudicot View MSA
122045414 5273 Angiosperm View MSA
121351363 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain