Gene : Thecc1EG046345 T. cacao v1.1
Defline:  (1 of 6) PF00060//PF00497 - Ligand-gated ion channel (Lig_chan) // Bacterial extracellular solute-binding proteins, family 3 (SBP_bac_3) Genomic Order:  1
Name:  ? Thecc1EG046345 Secondary Identifier:  ? PAC:27465061
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG046345 0.5kb upstream 0.5kb upstream 1878 true scaffold_377: 1-1878 Theobroma cacao
Thecc1EG046345 0.5kb upstream 0.5kb upstream 87 false scaffold_377: 1-87 Theobroma cacao
Thecc1EG046345 0.5kb downstream 0.5kb downstream 2291 true scaffold_377: 88-2378 Theobroma cacao
Thecc1EG046345 0.5kb downstream 0.5kb downstream 500 false scaffold_377: 1879-2378 Theobroma cacao
Thecc1EG046345 1.0kb upstream 1.0kb upstream 1878 true scaffold_377: 1-1878 Theobroma cacao
Thecc1EG046345 1.0kb upstream 1.0kb upstream 87 false scaffold_377: 1-87 Theobroma cacao
Thecc1EG046345 1.0kb downstream 1.0kb downstream 2791 true scaffold_377: 88-2878 Theobroma cacao
Thecc1EG046345 1.0kb downstream 1.0kb downstream 1000 false scaffold_377: 1879-2878 Theobroma cacao
Thecc1EG046345 2.0kb upstream 2.0kb upstream 1878 true scaffold_377: 1-1878 Theobroma cacao
Thecc1EG046345 2.0kb upstream 2.0kb upstream 87 false scaffold_377: 1-87 Theobroma cacao
Thecc1EG046345 2.0kb downstream 2.0kb downstream 3791 true scaffold_377: 88-3878 Theobroma cacao
Thecc1EG046345 2.0kb downstream 2.0kb downstream 2000 false scaffold_377: 1879-3878 Theobroma cacao
Thecc1EG046345 5.0kb upstream 5.0kb upstream 1878 true scaffold_377: 1-1878 Theobroma cacao
Thecc1EG046345 5.0kb upstream 5.0kb upstream 87 false scaffold_377: 1-87 Theobroma cacao
Thecc1EG046345 5.0kb downstream 5.0kb downstream 3862 true scaffold_377: 88-3949 Theobroma cacao
Thecc1EG046345 5.0kb downstream 5.0kb downstream 2071 false scaffold_377: 1879-3949 Theobroma cacao
Thecc1EG046345 10.0kb upstream 10.0kb upstream 1878 true scaffold_377: 1-1878 Theobroma cacao
Thecc1EG046345 10.0kb upstream 10.0kb upstream 87 false scaffold_377: 1-87 Theobroma cacao
Thecc1EG046345 10.0kb downstream 10.0kb downstream 3862 true scaffold_377: 88-3949 Theobroma cacao
Thecc1EG046345 10.0kb downstream 10.0kb downstream 2071 false scaffold_377: 1879-3949 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841047 5264 Brassicales-Malvales View MSA
124322829 5266 SBM View MSA
124249166 5268 Malvidae View MSA
124074110 5270 Rosid View MSA
123753015 5271 Pentapetalae View MSA
122797408 5272 Eudicot View MSA
122051662 5273 Angiosperm View MSA
121351346 5274 Embryophyte View MSA
123428796 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain