Gene : Thecc1EG016929 T. cacao v1.1
Defline:  (1 of 1) PTHR11822:SF5 - ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  140
Name:  ? Thecc1EG016929 Secondary Identifier:  ? PAC:27455788
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6549 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016929 0.5kb upstream 0.5kb upstream 6255 true scaffold_4: 914123-920377 Theobroma cacao
Thecc1EG016929 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 919878-920377 Theobroma cacao
Thecc1EG016929 0.5kb downstream 0.5kb downstream 6255 true scaffold_4: 913623-919877 Theobroma cacao
Thecc1EG016929 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 913623-914122 Theobroma cacao
Thecc1EG016929 1.0kb upstream 1.0kb upstream 6755 true scaffold_4: 914123-920877 Theobroma cacao
Thecc1EG016929 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 919878-920877 Theobroma cacao
Thecc1EG016929 1.0kb downstream 1.0kb downstream 6755 true scaffold_4: 913123-919877 Theobroma cacao
Thecc1EG016929 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 913123-914122 Theobroma cacao
Thecc1EG016929 2.0kb upstream 2.0kb upstream 7755 true scaffold_4: 914123-921877 Theobroma cacao
Thecc1EG016929 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 919878-921877 Theobroma cacao
Thecc1EG016929 2.0kb downstream 2.0kb downstream 7755 true scaffold_4: 912123-919877 Theobroma cacao
Thecc1EG016929 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 912123-914122 Theobroma cacao
Thecc1EG016929 5.0kb upstream 5.0kb upstream 10755 true scaffold_4: 914123-924877 Theobroma cacao
Thecc1EG016929 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 919878-924877 Theobroma cacao
Thecc1EG016929 5.0kb downstream 5.0kb downstream 10755 true scaffold_4: 909123-919877 Theobroma cacao
Thecc1EG016929 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 909123-914122 Theobroma cacao
Thecc1EG016929 10.0kb upstream 10.0kb upstream 15755 true scaffold_4: 914123-929877 Theobroma cacao
Thecc1EG016929 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 919878-929877 Theobroma cacao
Thecc1EG016929 10.0kb downstream 10.0kb downstream 15755 true scaffold_4: 904123-919877 Theobroma cacao
Thecc1EG016929 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 904123-914122 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041513 5273 Angiosperm View MSA
123829128 5264 Brassicales-Malvales View MSA
124338965 5266 SBM View MSA
124253580 5268 Malvidae View MSA
124066348 5270 Rosid View MSA
123740516 5271 Pentapetalae View MSA
122791819 5272 Eudicot View MSA
121349846 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain