Gene : Thecc1EG016926 T. cacao v1.1
Defline:  (1 of 1) 2.1.1.220 - tRNA (adenine(58)-N(1))-methyltransferase / tRNA m(1)A(58) methyltransferase Genomic Order:  136
Name:  ? Thecc1EG016926 Secondary Identifier:  ? PAC:27455019
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6829 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016926 0.5kb upstream 0.5kb upstream 3005 true scaffold_4: 903287-906291 Theobroma cacao
Thecc1EG016926 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 905792-906291 Theobroma cacao
Thecc1EG016926 0.5kb downstream 0.5kb downstream 3005 true scaffold_4: 902787-905791 Theobroma cacao
Thecc1EG016926 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 902787-903286 Theobroma cacao
Thecc1EG016926 1.0kb upstream 1.0kb upstream 3505 true scaffold_4: 903287-906791 Theobroma cacao
Thecc1EG016926 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 905792-906791 Theobroma cacao
Thecc1EG016926 1.0kb downstream 1.0kb downstream 3505 true scaffold_4: 902287-905791 Theobroma cacao
Thecc1EG016926 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 902287-903286 Theobroma cacao
Thecc1EG016926 2.0kb upstream 2.0kb upstream 4505 true scaffold_4: 903287-907791 Theobroma cacao
Thecc1EG016926 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 905792-907791 Theobroma cacao
Thecc1EG016926 2.0kb downstream 2.0kb downstream 4505 true scaffold_4: 901287-905791 Theobroma cacao
Thecc1EG016926 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 901287-903286 Theobroma cacao
Thecc1EG016926 5.0kb upstream 5.0kb upstream 7505 true scaffold_4: 903287-910791 Theobroma cacao
Thecc1EG016926 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 905792-910791 Theobroma cacao
Thecc1EG016926 5.0kb downstream 5.0kb downstream 7505 true scaffold_4: 898287-905791 Theobroma cacao
Thecc1EG016926 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 898287-903286 Theobroma cacao
Thecc1EG016926 10.0kb upstream 10.0kb upstream 12505 true scaffold_4: 903287-915791 Theobroma cacao
Thecc1EG016926 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 905792-915791 Theobroma cacao
Thecc1EG016926 10.0kb downstream 10.0kb downstream 12505 true scaffold_4: 893287-905791 Theobroma cacao
Thecc1EG016926 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 893287-903286 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833915 5264 Brassicales-Malvales View MSA
124342887 5266 SBM View MSA
124239555 5268 Malvidae View MSA
124067339 5270 Rosid View MSA
123740177 5271 Pentapetalae View MSA
122793445 5272 Eudicot View MSA
122045272 5273 Angiosperm View MSA
121345508 5274 Embryophyte View MSA
123423922 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain