Gene : Thecc1EG017282 T. cacao v1.1
Defline:  (1 of 1) PF03732//PF09668 - Retrotransposon gag protein (Retrotrans_gag) // Aspartyl protease (Asp_protease) Genomic Order:  418
Name:  ? Thecc1EG017282 Secondary Identifier:  ? PAC:27451678
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG017282 0.5kb upstream 0.5kb upstream 11880 true scaffold_4: 2783101-2794980 Theobroma cacao
Thecc1EG017282 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 2794481-2794980 Theobroma cacao
Thecc1EG017282 0.5kb downstream 0.5kb downstream 11880 true scaffold_4: 2782601-2794480 Theobroma cacao
Thecc1EG017282 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 2782601-2783100 Theobroma cacao
Thecc1EG017282 1.0kb upstream 1.0kb upstream 12380 true scaffold_4: 2783101-2795480 Theobroma cacao
Thecc1EG017282 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 2794481-2795480 Theobroma cacao
Thecc1EG017282 1.0kb downstream 1.0kb downstream 12380 true scaffold_4: 2782101-2794480 Theobroma cacao
Thecc1EG017282 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 2782101-2783100 Theobroma cacao
Thecc1EG017282 2.0kb upstream 2.0kb upstream 13380 true scaffold_4: 2783101-2796480 Theobroma cacao
Thecc1EG017282 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 2794481-2796480 Theobroma cacao
Thecc1EG017282 2.0kb downstream 2.0kb downstream 13380 true scaffold_4: 2781101-2794480 Theobroma cacao
Thecc1EG017282 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 2781101-2783100 Theobroma cacao
Thecc1EG017282 5.0kb upstream 5.0kb upstream 16380 true scaffold_4: 2783101-2799480 Theobroma cacao
Thecc1EG017282 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 2794481-2799480 Theobroma cacao
Thecc1EG017282 5.0kb downstream 5.0kb downstream 16380 true scaffold_4: 2778101-2794480 Theobroma cacao
Thecc1EG017282 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 2778101-2783100 Theobroma cacao
Thecc1EG017282 10.0kb upstream 10.0kb upstream 21380 true scaffold_4: 2783101-2804480 Theobroma cacao
Thecc1EG017282 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 2794481-2804480 Theobroma cacao
Thecc1EG017282 10.0kb downstream 10.0kb downstream 21380 true scaffold_4: 2773101-2794480 Theobroma cacao
Thecc1EG017282 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 2773101-2783100 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121524768 5273 Angiosperm View MSA
123823570 5264 Brassicales-Malvales View MSA
124319646 5266 SBM View MSA
124168177 5268 Malvidae View MSA
123891616 5270 Rosid View MSA
123473897 5271 Pentapetalae View MSA
122509181 5272 Eudicot View MSA
120797551 5274 Embryophyte View MSA
122839132 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain