Gene : Thecc1EG017112 T. cacao v1.1
Defline:  (1 of 1) PTHR10742//PTHR10742:SF229 - AMINE OXIDASE // PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  299
Name:  ? Thecc1EG017112 Secondary Identifier:  ? PAC:27452374
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CHLOROPHYLL-SYN Theobroma cacao pathologic  
Tcacao HEME-BIOSYNTHESIS-II Theobroma cacao pathologic  
Tcacao PWY-5918 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG017112 0.5kb upstream 0.5kb upstream 15864 true scaffold_4: 1916019-1931882 Theobroma cacao
Thecc1EG017112 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 1916019-1916518 Theobroma cacao
Thecc1EG017112 0.5kb downstream 0.5kb downstream 15864 true scaffold_4: 1916519-1932382 Theobroma cacao
Thecc1EG017112 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 1931883-1932382 Theobroma cacao
Thecc1EG017112 1.0kb upstream 1.0kb upstream 16364 true scaffold_4: 1915519-1931882 Theobroma cacao
Thecc1EG017112 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 1915519-1916518 Theobroma cacao
Thecc1EG017112 1.0kb downstream 1.0kb downstream 16364 true scaffold_4: 1916519-1932882 Theobroma cacao
Thecc1EG017112 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 1931883-1932882 Theobroma cacao
Thecc1EG017112 2.0kb upstream 2.0kb upstream 17364 true scaffold_4: 1914519-1931882 Theobroma cacao
Thecc1EG017112 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 1914519-1916518 Theobroma cacao
Thecc1EG017112 2.0kb downstream 2.0kb downstream 17364 true scaffold_4: 1916519-1933882 Theobroma cacao
Thecc1EG017112 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 1931883-1933882 Theobroma cacao
Thecc1EG017112 5.0kb upstream 5.0kb upstream 20364 true scaffold_4: 1911519-1931882 Theobroma cacao
Thecc1EG017112 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 1911519-1916518 Theobroma cacao
Thecc1EG017112 5.0kb downstream 5.0kb downstream 20364 true scaffold_4: 1916519-1936882 Theobroma cacao
Thecc1EG017112 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 1931883-1936882 Theobroma cacao
Thecc1EG017112 10.0kb upstream 10.0kb upstream 25364 true scaffold_4: 1906519-1931882 Theobroma cacao
Thecc1EG017112 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 1906519-1916518 Theobroma cacao
Thecc1EG017112 10.0kb downstream 10.0kb downstream 25364 true scaffold_4: 1916519-1941882 Theobroma cacao
Thecc1EG017112 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 1931883-1941882 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829368 5264 Brassicales-Malvales View MSA
124344124 5266 SBM View MSA
124241673 5268 Malvidae View MSA
124068806 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain