Gene : Thecc1EG017080 T. cacao v1.1
Defline:  (1 of 4) K00134 - glyceraldehyde 3-phosphate dehydrogenase (GAPDH, gapA) Genomic Order:  275
Name:  ? Thecc1EG017080 Secondary Identifier:  ? PAC:27454136
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao ANAEROFRUCAT-PWY Theobroma cacao pathologic  
Tcacao ANAGLYCOLYSIS-PWY Theobroma cacao pathologic  
Tcacao GLUCONEO-PWY Theobroma cacao pathologic  
Tcacao PWY-1042 Theobroma cacao pathologic  
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PWY66-399 Theobroma cacao pathologic  
Tcacao SUCSYN-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG017080 0.5kb upstream 0.5kb upstream 3516 true scaffold_4: 1730855-1734370 Theobroma cacao
Thecc1EG017080 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 1730855-1731354 Theobroma cacao
Thecc1EG017080 0.5kb downstream 0.5kb downstream 3516 true scaffold_4: 1731355-1734870 Theobroma cacao
Thecc1EG017080 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 1734371-1734870 Theobroma cacao
Thecc1EG017080 1.0kb upstream 1.0kb upstream 4016 true scaffold_4: 1730355-1734370 Theobroma cacao
Thecc1EG017080 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 1730355-1731354 Theobroma cacao
Thecc1EG017080 1.0kb downstream 1.0kb downstream 4016 true scaffold_4: 1731355-1735370 Theobroma cacao
Thecc1EG017080 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 1734371-1735370 Theobroma cacao
Thecc1EG017080 2.0kb upstream 2.0kb upstream 5016 true scaffold_4: 1729355-1734370 Theobroma cacao
Thecc1EG017080 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 1729355-1731354 Theobroma cacao
Thecc1EG017080 2.0kb downstream 2.0kb downstream 5016 true scaffold_4: 1731355-1736370 Theobroma cacao
Thecc1EG017080 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 1734371-1736370 Theobroma cacao
Thecc1EG017080 5.0kb upstream 5.0kb upstream 8016 true scaffold_4: 1726355-1734370 Theobroma cacao
Thecc1EG017080 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 1726355-1731354 Theobroma cacao
Thecc1EG017080 5.0kb downstream 5.0kb downstream 8016 true scaffold_4: 1731355-1739370 Theobroma cacao
Thecc1EG017080 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 1734371-1739370 Theobroma cacao
Thecc1EG017080 10.0kb upstream 10.0kb upstream 13016 true scaffold_4: 1721355-1734370 Theobroma cacao
Thecc1EG017080 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 1721355-1731354 Theobroma cacao
Thecc1EG017080 10.0kb downstream 10.0kb downstream 13016 true scaffold_4: 1731355-1744370 Theobroma cacao
Thecc1EG017080 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 1734371-1744370 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840158 5264 Brassicales-Malvales View MSA
124346732 5266 SBM View MSA
124250703 5268 Malvidae View MSA
124074393 5270 Rosid View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain