Gene : Thecc1EG017615 T. cacao v1.1
Defline:  (1 of 1) PTHR31480//PTHR31480:SF2 - FAMILY NOT NAMED // PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  596
Name:  ? Thecc1EG017615 Secondary Identifier:  ? PAC:27452658
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CAROTENOID-PWY Theobroma cacao pathologic  
Tcacao PWY-6475 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG017615 0.5kb upstream 0.5kb upstream 5487 true scaffold_4: 5315986-5321472 Theobroma cacao
Thecc1EG017615 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 5315986-5316485 Theobroma cacao
Thecc1EG017615 0.5kb downstream 0.5kb downstream 5487 true scaffold_4: 5316486-5321972 Theobroma cacao
Thecc1EG017615 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 5321473-5321972 Theobroma cacao
Thecc1EG017615 1.0kb upstream 1.0kb upstream 5987 true scaffold_4: 5315486-5321472 Theobroma cacao
Thecc1EG017615 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 5315486-5316485 Theobroma cacao
Thecc1EG017615 1.0kb downstream 1.0kb downstream 5987 true scaffold_4: 5316486-5322472 Theobroma cacao
Thecc1EG017615 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 5321473-5322472 Theobroma cacao
Thecc1EG017615 2.0kb upstream 2.0kb upstream 6987 true scaffold_4: 5314486-5321472 Theobroma cacao
Thecc1EG017615 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 5314486-5316485 Theobroma cacao
Thecc1EG017615 2.0kb downstream 2.0kb downstream 6987 true scaffold_4: 5316486-5323472 Theobroma cacao
Thecc1EG017615 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 5321473-5323472 Theobroma cacao
Thecc1EG017615 5.0kb upstream 5.0kb upstream 9987 true scaffold_4: 5311486-5321472 Theobroma cacao
Thecc1EG017615 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 5311486-5316485 Theobroma cacao
Thecc1EG017615 5.0kb downstream 5.0kb downstream 9987 true scaffold_4: 5316486-5326472 Theobroma cacao
Thecc1EG017615 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 5321473-5326472 Theobroma cacao
Thecc1EG017615 10.0kb upstream 10.0kb upstream 14987 true scaffold_4: 5306486-5321472 Theobroma cacao
Thecc1EG017615 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 5306486-5316485 Theobroma cacao
Thecc1EG017615 10.0kb downstream 10.0kb downstream 14987 true scaffold_4: 5316486-5331472 Theobroma cacao
Thecc1EG017615 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 5321473-5331472 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
123829809 5264 Brassicales-Malvales View MSA
124345575 5266 SBM View MSA
124251202 5268 Malvidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain