Gene : Thecc1EG017518 T. cacao v1.1
Defline:  (1 of 1) PTHR22594//PTHR22594:SF20 - ASPARTYL/LYSYL-TRNA SYNTHETASE // LYSINE--TRNA LIGASE Genomic Order:  572
Name:  ? Thecc1EG017518 Secondary Identifier:  ? PAC:27451947
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG017518 0.5kb upstream 0.5kb upstream 19046 true scaffold_4: 4446281-4465326 Theobroma cacao
Thecc1EG017518 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 4464827-4465326 Theobroma cacao
Thecc1EG017518 0.5kb downstream 0.5kb downstream 19046 true scaffold_4: 4445781-4464826 Theobroma cacao
Thecc1EG017518 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 4445781-4446280 Theobroma cacao
Thecc1EG017518 1.0kb upstream 1.0kb upstream 19546 true scaffold_4: 4446281-4465826 Theobroma cacao
Thecc1EG017518 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 4464827-4465826 Theobroma cacao
Thecc1EG017518 1.0kb downstream 1.0kb downstream 19546 true scaffold_4: 4445281-4464826 Theobroma cacao
Thecc1EG017518 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 4445281-4446280 Theobroma cacao
Thecc1EG017518 2.0kb upstream 2.0kb upstream 20546 true scaffold_4: 4446281-4466826 Theobroma cacao
Thecc1EG017518 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 4464827-4466826 Theobroma cacao
Thecc1EG017518 2.0kb downstream 2.0kb downstream 20546 true scaffold_4: 4444281-4464826 Theobroma cacao
Thecc1EG017518 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 4444281-4446280 Theobroma cacao
Thecc1EG017518 5.0kb upstream 5.0kb upstream 23546 true scaffold_4: 4446281-4469826 Theobroma cacao
Thecc1EG017518 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 4464827-4469826 Theobroma cacao
Thecc1EG017518 5.0kb downstream 5.0kb downstream 23546 true scaffold_4: 4441281-4464826 Theobroma cacao
Thecc1EG017518 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 4441281-4446280 Theobroma cacao
Thecc1EG017518 10.0kb upstream 10.0kb upstream 28546 true scaffold_4: 4446281-4474826 Theobroma cacao
Thecc1EG017518 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 4464827-4474826 Theobroma cacao
Thecc1EG017518 10.0kb downstream 10.0kb downstream 28546 true scaffold_4: 4436281-4464826 Theobroma cacao
Thecc1EG017518 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 4436281-4446280 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829318 5264 Brassicales-Malvales View MSA
124344689 5266 SBM View MSA
124239048 5268 Malvidae View MSA
124063653 5270 Rosid View MSA
123739204 5271 Pentapetalae View MSA
122788489 5272 Eudicot View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain