Gene : Thecc1EG017344 T. cacao v1.1
Defline:  (1 of 1) KOG2164 - Predicted E3 ubiquitin ligase Genomic Order:  470
Name:  ? Thecc1EG017344 Secondary Identifier:  ? PAC:27452468
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG017344 0.5kb upstream 0.5kb upstream 5751 true scaffold_4: 3112237-3117987 Theobroma cacao
Thecc1EG017344 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3117488-3117987 Theobroma cacao
Thecc1EG017344 0.5kb downstream 0.5kb downstream 5751 true scaffold_4: 3111737-3117487 Theobroma cacao
Thecc1EG017344 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3111737-3112236 Theobroma cacao
Thecc1EG017344 1.0kb upstream 1.0kb upstream 6251 true scaffold_4: 3112237-3118487 Theobroma cacao
Thecc1EG017344 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3117488-3118487 Theobroma cacao
Thecc1EG017344 1.0kb downstream 1.0kb downstream 6251 true scaffold_4: 3111237-3117487 Theobroma cacao
Thecc1EG017344 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3111237-3112236 Theobroma cacao
Thecc1EG017344 2.0kb upstream 2.0kb upstream 7251 true scaffold_4: 3112237-3119487 Theobroma cacao
Thecc1EG017344 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3117488-3119487 Theobroma cacao
Thecc1EG017344 2.0kb downstream 2.0kb downstream 7251 true scaffold_4: 3110237-3117487 Theobroma cacao
Thecc1EG017344 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3110237-3112236 Theobroma cacao
Thecc1EG017344 5.0kb upstream 5.0kb upstream 10251 true scaffold_4: 3112237-3122487 Theobroma cacao
Thecc1EG017344 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3117488-3122487 Theobroma cacao
Thecc1EG017344 5.0kb downstream 5.0kb downstream 10251 true scaffold_4: 3107237-3117487 Theobroma cacao
Thecc1EG017344 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3107237-3112236 Theobroma cacao
Thecc1EG017344 10.0kb upstream 10.0kb upstream 15251 true scaffold_4: 3112237-3127487 Theobroma cacao
Thecc1EG017344 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3117488-3127487 Theobroma cacao
Thecc1EG017344 10.0kb downstream 10.0kb downstream 15251 true scaffold_4: 3102237-3117487 Theobroma cacao
Thecc1EG017344 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3102237-3112236 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837809 5264 Brassicales-Malvales View MSA
124341668 5266 SBM View MSA
124243095 5268 Malvidae View MSA
124060786 5270 Rosid View MSA
123742061 5271 Pentapetalae View MSA
122793495 5272 Eudicot View MSA
122042542 5273 Angiosperm View MSA
121344560 5274 Embryophyte View MSA
123423758 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain