Gene : Thecc1EG018676 T. cacao v1.1
Defline:  (1 of 3) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  931
Name:  ? Thecc1EG018676 Secondary Identifier:  ? PAC:27451679
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-3461 Theobroma cacao pathologic  
Tcacao PWY-3462 Theobroma cacao pathologic  
Tcacao PWY-3481 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG018676 0.5kb upstream 0.5kb upstream 4793 true scaffold_4: 17148178-17152970 Theobroma cacao
Thecc1EG018676 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 17152471-17152970 Theobroma cacao
Thecc1EG018676 0.5kb downstream 0.5kb downstream 4793 true scaffold_4: 17147678-17152470 Theobroma cacao
Thecc1EG018676 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 17147678-17148177 Theobroma cacao
Thecc1EG018676 1.0kb upstream 1.0kb upstream 5293 true scaffold_4: 17148178-17153470 Theobroma cacao
Thecc1EG018676 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 17152471-17153470 Theobroma cacao
Thecc1EG018676 1.0kb downstream 1.0kb downstream 5293 true scaffold_4: 17147178-17152470 Theobroma cacao
Thecc1EG018676 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 17147178-17148177 Theobroma cacao
Thecc1EG018676 2.0kb upstream 2.0kb upstream 6293 true scaffold_4: 17148178-17154470 Theobroma cacao
Thecc1EG018676 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 17152471-17154470 Theobroma cacao
Thecc1EG018676 2.0kb downstream 2.0kb downstream 6293 true scaffold_4: 17146178-17152470 Theobroma cacao
Thecc1EG018676 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 17146178-17148177 Theobroma cacao
Thecc1EG018676 5.0kb upstream 5.0kb upstream 9293 true scaffold_4: 17148178-17157470 Theobroma cacao
Thecc1EG018676 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 17152471-17157470 Theobroma cacao
Thecc1EG018676 5.0kb downstream 5.0kb downstream 9293 true scaffold_4: 17143178-17152470 Theobroma cacao
Thecc1EG018676 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 17143178-17148177 Theobroma cacao
Thecc1EG018676 10.0kb upstream 10.0kb upstream 14293 true scaffold_4: 17148178-17162470 Theobroma cacao
Thecc1EG018676 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 17152471-17162470 Theobroma cacao
Thecc1EG018676 10.0kb downstream 10.0kb downstream 14293 true scaffold_4: 17138178-17152470 Theobroma cacao
Thecc1EG018676 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 17138178-17148177 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
123828372 5264 Brassicales-Malvales View MSA
124336779 5266 SBM View MSA
124252605 5268 Malvidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain