Gene : Thecc1EG019300 T. cacao v1.1
Defline:  (1 of 2) PTHR23012//PTHR23012:SF89 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Genomic Order:  1300
Name:  ? Thecc1EG019300 Secondary Identifier:  ? PAC:27456009
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG019300 0.5kb upstream 0.5kb upstream 6568 true scaffold_4: 21649485-21656052 Theobroma cacao
Thecc1EG019300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 21649485-21649984 Theobroma cacao
Thecc1EG019300 0.5kb downstream 0.5kb downstream 6568 true scaffold_4: 21649985-21656552 Theobroma cacao
Thecc1EG019300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 21656053-21656552 Theobroma cacao
Thecc1EG019300 1.0kb upstream 1.0kb upstream 7068 true scaffold_4: 21648985-21656052 Theobroma cacao
Thecc1EG019300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 21648985-21649984 Theobroma cacao
Thecc1EG019300 1.0kb downstream 1.0kb downstream 7068 true scaffold_4: 21649985-21657052 Theobroma cacao
Thecc1EG019300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 21656053-21657052 Theobroma cacao
Thecc1EG019300 2.0kb upstream 2.0kb upstream 8068 true scaffold_4: 21647985-21656052 Theobroma cacao
Thecc1EG019300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 21647985-21649984 Theobroma cacao
Thecc1EG019300 2.0kb downstream 2.0kb downstream 8068 true scaffold_4: 21649985-21658052 Theobroma cacao
Thecc1EG019300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 21656053-21658052 Theobroma cacao
Thecc1EG019300 5.0kb upstream 5.0kb upstream 11068 true scaffold_4: 21644985-21656052 Theobroma cacao
Thecc1EG019300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 21644985-21649984 Theobroma cacao
Thecc1EG019300 5.0kb downstream 5.0kb downstream 11068 true scaffold_4: 21649985-21661052 Theobroma cacao
Thecc1EG019300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 21656053-21661052 Theobroma cacao
Thecc1EG019300 10.0kb upstream 10.0kb upstream 16068 true scaffold_4: 21639985-21656052 Theobroma cacao
Thecc1EG019300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 21639985-21649984 Theobroma cacao
Thecc1EG019300 10.0kb downstream 10.0kb downstream 16068 true scaffold_4: 21649985-21666052 Theobroma cacao
Thecc1EG019300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 21656053-21666052 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041328 5273 Angiosperm View MSA
123835884 5264 Brassicales-Malvales View MSA
124347757 5266 SBM View MSA
124250999 5268 Malvidae View MSA
124072667 5270 Rosid View MSA
123750896 5271 Pentapetalae View MSA
122789616 5272 Eudicot View MSA
121309830 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain