Gene : Thecc1EG019156 T. cacao v1.1
Defline:  (1 of 6) K13789 - geranylgeranyl diphosphate synthase, type II (GGPS) Genomic Order:  1214
Name:  ? Thecc1EG019156 Secondary Identifier:  ? PAC:27454912
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5120 Theobroma cacao pathologic  
Tcacao PWY-5910 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG019156 0.5kb upstream 0.5kb upstream 2179 true scaffold_4: 20578100-20580278 Theobroma cacao
Thecc1EG019156 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 20578100-20578599 Theobroma cacao
Thecc1EG019156 0.5kb downstream 0.5kb downstream 2179 true scaffold_4: 20578600-20580778 Theobroma cacao
Thecc1EG019156 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 20580279-20580778 Theobroma cacao
Thecc1EG019156 1.0kb upstream 1.0kb upstream 2679 true scaffold_4: 20577600-20580278 Theobroma cacao
Thecc1EG019156 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 20577600-20578599 Theobroma cacao
Thecc1EG019156 1.0kb downstream 1.0kb downstream 2679 true scaffold_4: 20578600-20581278 Theobroma cacao
Thecc1EG019156 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 20580279-20581278 Theobroma cacao
Thecc1EG019156 2.0kb upstream 2.0kb upstream 3679 true scaffold_4: 20576600-20580278 Theobroma cacao
Thecc1EG019156 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 20576600-20578599 Theobroma cacao
Thecc1EG019156 2.0kb downstream 2.0kb downstream 3679 true scaffold_4: 20578600-20582278 Theobroma cacao
Thecc1EG019156 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 20580279-20582278 Theobroma cacao
Thecc1EG019156 5.0kb upstream 5.0kb upstream 6679 true scaffold_4: 20573600-20580278 Theobroma cacao
Thecc1EG019156 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 20573600-20578599 Theobroma cacao
Thecc1EG019156 5.0kb downstream 5.0kb downstream 6679 true scaffold_4: 20578600-20585278 Theobroma cacao
Thecc1EG019156 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 20580279-20585278 Theobroma cacao
Thecc1EG019156 10.0kb upstream 10.0kb upstream 11679 true scaffold_4: 20568600-20580278 Theobroma cacao
Thecc1EG019156 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 20568600-20578599 Theobroma cacao
Thecc1EG019156 10.0kb downstream 10.0kb downstream 11679 true scaffold_4: 20578600-20590278 Theobroma cacao
Thecc1EG019156 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 20580279-20590278 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123819528 5264 Brassicales-Malvales Singleton cluster - no MSA
124350864 5266 SBM View MSA
124251250 5268 Malvidae View MSA
124051358 5270 Rosid View MSA
123745518 5271 Pentapetalae View MSA
122795597 5272 Eudicot View MSA
122051071 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain