Gene : Thecc1EG019094 T. cacao v1.1
Defline:  (1 of 9) PF13961//PF14227 - Domain of unknown function (DUF4219) (DUF4219) // gag-polypeptide of LTR copia-type (UBN2_2) Genomic Order:  1168
Name:  ? Thecc1EG019094 Secondary Identifier:  ? PAC:27454471
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG019094 0.5kb upstream 0.5kb upstream 1474 true scaffold_4: 20168436-20169909 Theobroma cacao
Thecc1EG019094 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 20169410-20169909 Theobroma cacao
Thecc1EG019094 0.5kb downstream 0.5kb downstream 1474 true scaffold_4: 20167936-20169409 Theobroma cacao
Thecc1EG019094 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 20167936-20168435 Theobroma cacao
Thecc1EG019094 1.0kb upstream 1.0kb upstream 1974 true scaffold_4: 20168436-20170409 Theobroma cacao
Thecc1EG019094 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 20169410-20170409 Theobroma cacao
Thecc1EG019094 1.0kb downstream 1.0kb downstream 1974 true scaffold_4: 20167436-20169409 Theobroma cacao
Thecc1EG019094 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 20167436-20168435 Theobroma cacao
Thecc1EG019094 2.0kb upstream 2.0kb upstream 2974 true scaffold_4: 20168436-20171409 Theobroma cacao
Thecc1EG019094 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 20169410-20171409 Theobroma cacao
Thecc1EG019094 2.0kb downstream 2.0kb downstream 2974 true scaffold_4: 20166436-20169409 Theobroma cacao
Thecc1EG019094 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 20166436-20168435 Theobroma cacao
Thecc1EG019094 5.0kb upstream 5.0kb upstream 5974 true scaffold_4: 20168436-20174409 Theobroma cacao
Thecc1EG019094 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 20169410-20174409 Theobroma cacao
Thecc1EG019094 5.0kb downstream 5.0kb downstream 5974 true scaffold_4: 20163436-20169409 Theobroma cacao
Thecc1EG019094 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 20163436-20168435 Theobroma cacao
Thecc1EG019094 10.0kb upstream 10.0kb upstream 10974 true scaffold_4: 20168436-20179409 Theobroma cacao
Thecc1EG019094 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 20169410-20179409 Theobroma cacao
Thecc1EG019094 10.0kb downstream 10.0kb downstream 10974 true scaffold_4: 20158436-20169409 Theobroma cacao
Thecc1EG019094 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 20158436-20168435 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841161 5264 Brassicales-Malvales View MSA
124351377 5266 SBM View MSA
124253923 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain