Gene : Thecc1EG019422 T. cacao v1.1
Defline:  (1 of 1) PTHR17224:SF3 - CHLOROPLASTIC GROUP IIB INTRON SPLICING FACILITATOR CRS2-A, CHLOROPLASTIC-RELATED Genomic Order:  1383
Name:  ? Thecc1EG019422 Secondary Identifier:  ? PAC:27455495
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG019422 0.5kb upstream 0.5kb upstream 6754 true scaffold_4: 22361506-22368259 Theobroma cacao
Thecc1EG019422 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 22361506-22362005 Theobroma cacao
Thecc1EG019422 0.5kb downstream 0.5kb downstream 6754 true scaffold_4: 22362006-22368759 Theobroma cacao
Thecc1EG019422 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 22368260-22368759 Theobroma cacao
Thecc1EG019422 1.0kb upstream 1.0kb upstream 7254 true scaffold_4: 22361006-22368259 Theobroma cacao
Thecc1EG019422 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 22361006-22362005 Theobroma cacao
Thecc1EG019422 1.0kb downstream 1.0kb downstream 7254 true scaffold_4: 22362006-22369259 Theobroma cacao
Thecc1EG019422 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 22368260-22369259 Theobroma cacao
Thecc1EG019422 2.0kb upstream 2.0kb upstream 8254 true scaffold_4: 22360006-22368259 Theobroma cacao
Thecc1EG019422 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 22360006-22362005 Theobroma cacao
Thecc1EG019422 2.0kb downstream 2.0kb downstream 8254 true scaffold_4: 22362006-22370259 Theobroma cacao
Thecc1EG019422 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 22368260-22370259 Theobroma cacao
Thecc1EG019422 5.0kb upstream 5.0kb upstream 11254 true scaffold_4: 22357006-22368259 Theobroma cacao
Thecc1EG019422 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 22357006-22362005 Theobroma cacao
Thecc1EG019422 5.0kb downstream 5.0kb downstream 11254 true scaffold_4: 22362006-22373259 Theobroma cacao
Thecc1EG019422 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 22368260-22373259 Theobroma cacao
Thecc1EG019422 10.0kb upstream 10.0kb upstream 16254 true scaffold_4: 22352006-22368259 Theobroma cacao
Thecc1EG019422 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 22352006-22362005 Theobroma cacao
Thecc1EG019422 10.0kb downstream 10.0kb downstream 16254 true scaffold_4: 22362006-22378259 Theobroma cacao
Thecc1EG019422 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 22368260-22378259 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123836540 5264 Brassicales-Malvales View MSA
124336463 5266 SBM View MSA
124238941 5268 Malvidae View MSA
124065240 5270 Rosid View MSA
123737233 5271 Pentapetalae View MSA
122785748 5272 Eudicot View MSA
122047597 5273 Angiosperm View MSA
121310770 5274 Embryophyte View MSA
123426354 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain