Gene : Thecc1EG019851 T. cacao v1.1
Defline:  (1 of 1) PTHR10314:SF110 - CYSTEINE SYNTHASE Genomic Order:  1692
Name:  ? Thecc1EG019851 Secondary Identifier:  ? PAC:27454900
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CYSTSYN-PWY Theobroma cacao pathologic  
Tcacao PWY-6936 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG019851 0.5kb upstream 0.5kb upstream 9170 true scaffold_4: 25345039-25354208 Theobroma cacao
Thecc1EG019851 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 25345039-25345538 Theobroma cacao
Thecc1EG019851 0.5kb downstream 0.5kb downstream 9170 true scaffold_4: 25345539-25354708 Theobroma cacao
Thecc1EG019851 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 25354209-25354708 Theobroma cacao
Thecc1EG019851 1.0kb upstream 1.0kb upstream 9670 true scaffold_4: 25344539-25354208 Theobroma cacao
Thecc1EG019851 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 25344539-25345538 Theobroma cacao
Thecc1EG019851 1.0kb downstream 1.0kb downstream 9670 true scaffold_4: 25345539-25355208 Theobroma cacao
Thecc1EG019851 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 25354209-25355208 Theobroma cacao
Thecc1EG019851 2.0kb upstream 2.0kb upstream 10670 true scaffold_4: 25343539-25354208 Theobroma cacao
Thecc1EG019851 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 25343539-25345538 Theobroma cacao
Thecc1EG019851 2.0kb downstream 2.0kb downstream 10670 true scaffold_4: 25345539-25356208 Theobroma cacao
Thecc1EG019851 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 25354209-25356208 Theobroma cacao
Thecc1EG019851 5.0kb upstream 5.0kb upstream 13670 true scaffold_4: 25340539-25354208 Theobroma cacao
Thecc1EG019851 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 25340539-25345538 Theobroma cacao
Thecc1EG019851 5.0kb downstream 5.0kb downstream 13670 true scaffold_4: 25345539-25359208 Theobroma cacao
Thecc1EG019851 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 25354209-25359208 Theobroma cacao
Thecc1EG019851 10.0kb upstream 10.0kb upstream 18670 true scaffold_4: 25335539-25354208 Theobroma cacao
Thecc1EG019851 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 25335539-25345538 Theobroma cacao
Thecc1EG019851 10.0kb downstream 10.0kb downstream 18670 true scaffold_4: 25345539-25364208 Theobroma cacao
Thecc1EG019851 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 25354209-25364208 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838792 5264 Brassicales-Malvales View MSA
124340029 5266 SBM View MSA
124241185 5268 Malvidae View MSA
124068226 5270 Rosid View MSA
123737517 5271 Pentapetalae View MSA
122787269 5272 Eudicot View MSA
122042312 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain