Gene : Thecc1EG020103 T. cacao v1.1
Defline:  (1 of 1) 2.3.3.13 - 2-isopropylmalate synthase / Isopropylmalate synthetase Genomic Order:  1890
Name:  ? Thecc1EG020103 Secondary Identifier:  ? PAC:27455335
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao BRANCHED-CHAIN-AA-SYN-PWY Theobroma cacao pathologic  
Tcacao LEUSYN-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020103 0.5kb upstream 0.5kb upstream 10567 true scaffold_4: 26666719-26677285 Theobroma cacao
Thecc1EG020103 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 26666719-26667218 Theobroma cacao
Thecc1EG020103 0.5kb downstream 0.5kb downstream 10567 true scaffold_4: 26667219-26677785 Theobroma cacao
Thecc1EG020103 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 26677286-26677785 Theobroma cacao
Thecc1EG020103 1.0kb upstream 1.0kb upstream 11067 true scaffold_4: 26666219-26677285 Theobroma cacao
Thecc1EG020103 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 26666219-26667218 Theobroma cacao
Thecc1EG020103 1.0kb downstream 1.0kb downstream 11067 true scaffold_4: 26667219-26678285 Theobroma cacao
Thecc1EG020103 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 26677286-26678285 Theobroma cacao
Thecc1EG020103 2.0kb upstream 2.0kb upstream 12067 true scaffold_4: 26665219-26677285 Theobroma cacao
Thecc1EG020103 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 26665219-26667218 Theobroma cacao
Thecc1EG020103 2.0kb downstream 2.0kb downstream 12067 true scaffold_4: 26667219-26679285 Theobroma cacao
Thecc1EG020103 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 26677286-26679285 Theobroma cacao
Thecc1EG020103 5.0kb upstream 5.0kb upstream 15067 true scaffold_4: 26662219-26677285 Theobroma cacao
Thecc1EG020103 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 26662219-26667218 Theobroma cacao
Thecc1EG020103 5.0kb downstream 5.0kb downstream 15067 true scaffold_4: 26667219-26682285 Theobroma cacao
Thecc1EG020103 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 26677286-26682285 Theobroma cacao
Thecc1EG020103 10.0kb upstream 10.0kb upstream 20067 true scaffold_4: 26657219-26677285 Theobroma cacao
Thecc1EG020103 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 26657219-26667218 Theobroma cacao
Thecc1EG020103 10.0kb downstream 10.0kb downstream 20067 true scaffold_4: 26667219-26687285 Theobroma cacao
Thecc1EG020103 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 26677286-26687285 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837144 5264 Brassicales-Malvales View MSA
124322248 5266 SBM View MSA
124251393 5268 Malvidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain