Gene : Thecc1EG020024 T. cacao v1.1
Defline:  (1 of 1) PTHR11735//PTHR11735:SF14 - O-SIALOGLYCOPROTEIN ENDOPEPTIDASE // TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED Genomic Order:  1826
Name:  ? Thecc1EG020024 Secondary Identifier:  ? PAC:27453376
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY0-1587 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020024 0.5kb upstream 0.5kb upstream 11601 true scaffold_4: 26215558-26227158 Theobroma cacao
Thecc1EG020024 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 26215558-26216057 Theobroma cacao
Thecc1EG020024 0.5kb downstream 0.5kb downstream 11601 true scaffold_4: 26216058-26227658 Theobroma cacao
Thecc1EG020024 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 26227159-26227658 Theobroma cacao
Thecc1EG020024 1.0kb upstream 1.0kb upstream 12101 true scaffold_4: 26215058-26227158 Theobroma cacao
Thecc1EG020024 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 26215058-26216057 Theobroma cacao
Thecc1EG020024 1.0kb downstream 1.0kb downstream 12101 true scaffold_4: 26216058-26228158 Theobroma cacao
Thecc1EG020024 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 26227159-26228158 Theobroma cacao
Thecc1EG020024 2.0kb upstream 2.0kb upstream 13101 true scaffold_4: 26214058-26227158 Theobroma cacao
Thecc1EG020024 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 26214058-26216057 Theobroma cacao
Thecc1EG020024 2.0kb downstream 2.0kb downstream 13101 true scaffold_4: 26216058-26229158 Theobroma cacao
Thecc1EG020024 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 26227159-26229158 Theobroma cacao
Thecc1EG020024 5.0kb upstream 5.0kb upstream 16101 true scaffold_4: 26211058-26227158 Theobroma cacao
Thecc1EG020024 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 26211058-26216057 Theobroma cacao
Thecc1EG020024 5.0kb downstream 5.0kb downstream 16101 true scaffold_4: 26216058-26232158 Theobroma cacao
Thecc1EG020024 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 26227159-26232158 Theobroma cacao
Thecc1EG020024 10.0kb upstream 10.0kb upstream 21101 true scaffold_4: 26206058-26227158 Theobroma cacao
Thecc1EG020024 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 26206058-26216057 Theobroma cacao
Thecc1EG020024 10.0kb downstream 10.0kb downstream 21101 true scaffold_4: 26216058-26237158 Theobroma cacao
Thecc1EG020024 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 26227159-26237158 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829885 5264 Brassicales-Malvales View MSA
124350646 5266 SBM View MSA
124246525 5268 Malvidae View MSA
124066071 5270 Rosid View MSA
123747951 5271 Pentapetalae View MSA
122791458 5272 Eudicot View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain